eF-site ID 5caw-A
PDB Code 5caw
Chain A

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Title Structure of Pediculus humanus Parkin bound to phospho-ubiquitin
Classification SIGNALING PROTEIN
Compound E3 ubiquitin-protein ligase parkin
Source Pediculus humanus subsp. corporis (Body louse) (UBB_HUMAN)
Sequence A:  NKAHFFIYCANPCKKINTGKLRVCCSECKHGAFTVDTDPQ
SWADVLDKNKITGVCNNVGCEGLYAKFYFKCASHPSQGEN
DTAVPLNLIKRNHKKIPCLACTDICDPVLVFSCDNRHVTC
LECFKNYCGSRLKDRQFLSHPDFGYTLPCPAGCSNSFIEE
VHHFRLLTDAQYEQYHRFATEEFILQAGGVLCPQPGCGQG
ILIDQNCNRVQCSCGYVFCGKCLEGFHLGECLNPLDPEKL
EKARWDVLTKPCPKCRTSTERAGGCMHMICTRANCGFHWC
WVCQGPWERDCMASHWFG
Description


Functional site

1) chain A
residue 151
type
sequence C
description binding site for residue ZN A 1001
source : AC1

2) chain A
residue 155
type
sequence C
description binding site for residue ZN A 1001
source : AC1

3) chain A
residue 213
type
sequence C
description binding site for residue ZN A 1001
source : AC1

4) chain A
residue 216
type
sequence H
description binding site for residue ZN A 1001
source : AC1

5) chain A
residue 167
type
sequence C
description binding site for residue ZN A 1002
source : AC2

6) chain A
residue 170
type
sequence C
description binding site for residue ZN A 1002
source : AC2

7) chain A
residue 197
type
sequence C
description binding site for residue ZN A 1002
source : AC2

8) chain A
residue 202
type
sequence C
description binding site for residue ZN A 1002
source : AC2

9) chain A
residue 240
type
sequence C
description binding site for residue ZN A 1003
source : AC3

10) chain A
residue 243
type
sequence C
description binding site for residue ZN A 1003
source : AC3

11) chain A
residue 262
type
sequence C
description binding site for residue ZN A 1003
source : AC3

12) chain A
residue 265
type
sequence C
description binding site for residue ZN A 1003
source : AC3

13) chain A
residue 255
type
sequence C
description binding site for residue ZN A 1004
source : AC4

14) chain A
residue 259
type
sequence H
description binding site for residue ZN A 1004
source : AC4

15) chain A
residue 291
type
sequence C
description binding site for residue ZN A 1004
source : AC4

16) chain A
residue 295
type
sequence C
description binding site for residue ZN A 1004
source : AC4

17) chain A
residue 334
type
sequence C
description binding site for residue ZN A 1005
source : AC5

18) chain A
residue 339
type
sequence C
description binding site for residue ZN A 1005
source : AC5

19) chain A
residue 354
type
sequence C
description binding site for residue ZN A 1005
source : AC5

20) chain A
residue 356
type
sequence C
description binding site for residue ZN A 1005
source : AC5

21) chain A
residue 361
type
sequence C
description binding site for residue ZN A 1006
source : AC6

22) chain A
residue 364
type
sequence C
description binding site for residue ZN A 1006
source : AC6

23) chain A
residue 369
type
sequence H
description binding site for residue ZN A 1006
source : AC6

24) chain A
residue 373
type
sequence C
description binding site for residue ZN A 1006
source : AC6

25) chain A
residue 415
type
sequence C
description binding site for residue ZN A 1007
source : AC7

26) chain A
residue 418
type
sequence C
description binding site for residue ZN A 1007
source : AC7

27) chain A
residue 433
type
sequence C
description binding site for residue ZN A 1007
source : AC7

28) chain A
residue 438
type
sequence C
description binding site for residue ZN A 1007
source : AC7

29) chain A
residue 443
type
sequence C
description binding site for residue ZN A 1008
source : AC8

30) chain A
residue 446
type
sequence C
description binding site for residue ZN A 1008
source : AC8

31) chain A
residue 454
type
sequence C
description binding site for residue ZN A 1008
source : AC8

32) chain A
residue 458
type
sequence H
description binding site for residue ZN A 1008
source : AC8

33) chain A
residue 183
type
sequence S
description binding site for residue SO4 A 1009
source : AC9

34) chain A
residue 184
type
sequence W
description binding site for residue SO4 A 1009
source : AC9

35) chain A
residue 258
type
sequence R
description binding site for residue SO4 A 1009
source : AC9

36) chain A
residue 441
type
sequence H
description binding site for residue SO4 C 1010
source : AE1

37) chain A
residue 449
type
sequence P
description binding site for residue SO4 C 1010
source : AE1

38) chain A
residue 151
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

39) chain A
residue 446
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

40) chain A
residue 454
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

41) chain A
residue 458
type CROSSLNK
sequence H
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

42) chain A
residue 167
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

43) chain A
residue 197
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

44) chain A
residue 202
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

45) chain A
residue 213
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

46) chain A
residue 216
type CROSSLNK
sequence H
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

47) chain A
residue 443
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI7

48) chain A
residue 339
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

49) chain A
residue 354
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

50) chain A
residue 356
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

51) chain A
residue 361
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

52) chain A
residue 364
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

53) chain A
residue 369
type CROSSLNK
sequence H
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

54) chain A
residue 373
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

55) chain A
residue 415
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

56) chain A
residue 418
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

57) chain A
residue 433
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

58) chain A
residue 438
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

59) chain A
residue 262
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

60) chain A
residue 265
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

61) chain A
residue 291
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

62) chain A
residue 295
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

63) chain A
residue 334
type CROSSLNK
sequence C
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
source Swiss-Prot : SWS_FT_FI8

64) chain A
residue 314
type CROSSLNK
sequence Y
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
source Swiss-Prot : SWS_FT_FI9


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