eF-site ID 5c6m-ABCD
PDB Code 5c6m
Chain A, B, C, D

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Title Crystal structure of deoxyribose-phosphate aldolase from Shewanella halifaxensis
Classification LYASE
Compound Deoxyribose-phosphate aldolase
Source Shewanella halifaxensis (strain HAW-EB4) (DEOC_SHEHH)
Sequence A:  MSDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPA
GDTAAICIYPRFIPIARKTLNEIGGDDIKIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFE
LVKACKEACGEDTILKVIIESGVLADPALIRKASELSIDA
GADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPA
GGVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
LLHTLELA
B:  MSDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPA
GDTAAICIYPRFIPIARKTLNEIGGDDIKIATVTNFPHGN
DDIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFE
LVKACKEACGEDTILKVIIESGVLADPALIRKASELSIDA
GADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPA
GGVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTN
LLHTLELA
C:  SDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPAG
DTAAICIYPRFIPIARKTLNEIGGDDIKIATVTNFPHGND
DIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFEL
VKACKEACGEDTILKVIIESGVLADPALIRKASELSIDAG
ADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPAG
GVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTNL
LHTLEL
D:  SDLKKAAQQAISLMDLTTLNDDDTDQKVIELCHKAKTPAG
DTAAICIYPRFIPIARKTLNEIGGDDIKIATVTNFPHGND
DIAIAVLETRAAVAYGADEVDVVFPYRALMEGNETVGFEL
VKACKEACGEDTILKVIIESGVLADPALIRKASELSIDAG
ADFIKTSTGKVAVNATLEAAEIMMTVISEKNPKVGFKPAG
GVKDAAAAAEFLGVAARLLGDDWATPATFRFGASSLLTNL
LHTLELAD
Description


Functional site

1) chain A
residue 76
type
sequence F
description binding site for residue NA A 301
source : AC1

2) chain A
residue 50
type
sequence P
description binding site for residue CL A 302
source : AC2

3) chain A
residue 51
type
sequence R
description binding site for residue CL A 302
source : AC2

4) chain B
residue 76
type
sequence F
description binding site for residue NA B 301
source : AC3

5) chain B
residue 50
type
sequence P
description binding site for residue CL B 302
source : AC4

6) chain B
residue 51
type
sequence R
description binding site for residue CL B 302
source : AC4

7) chain C
residue 50
type
sequence P
description binding site for residue CL C 301
source : AC5

8) chain C
residue 51
type
sequence R
description binding site for residue CL C 301
source : AC5

9) chain D
residue 51
type
sequence R
description binding site for residue CL C 301
source : AC5

10) chain D
residue 50
type
sequence P
description binding site for residue CL D 301
source : AC6

11) chain D
residue 51
type
sequence R
description binding site for residue CL D 301
source : AC6

12) chain A
residue 102
type ACT_SITE
sequence D
description Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI1

13) chain A
residue 198
type ACT_SITE
sequence K
description Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI1

14) chain B
residue 102
type ACT_SITE
sequence D
description Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI1

15) chain B
residue 198
type ACT_SITE
sequence K
description Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI1

16) chain C
residue 102
type ACT_SITE
sequence D
description Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI1

17) chain C
residue 198
type ACT_SITE
sequence K
description Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI1

18) chain D
residue 102
type ACT_SITE
sequence D
description Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI1

19) chain D
residue 198
type ACT_SITE
sequence K
description Proton donor/acceptor => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 166
type ACT_SITE
sequence K
description Schiff-base intermediate with acetaldehyde => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI2

21) chain B
residue 166
type ACT_SITE
sequence K
description Schiff-base intermediate with acetaldehyde => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI2

22) chain C
residue 166
type ACT_SITE
sequence K
description Schiff-base intermediate with acetaldehyde => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI2

23) chain D
residue 166
type ACT_SITE
sequence K
description Schiff-base intermediate with acetaldehyde => ECO:0000255|HAMAP-Rule:MF_00592
source Swiss-Prot : SWS_FT_FI2


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