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eF-site ID
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5c4a-J |
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PDB Code
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5c4a |
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Chain
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J |
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click to enlarge
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Title
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Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble |
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Classification
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TRANSFERASE/RNA/DNA |
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Compound
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DNA-directed RNA polymerase II subunit RPB1 |
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Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
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Sequence
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J: |
MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLG
LKRYCCRRMILTHVDLIEKFLRYNPL
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Description
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Functional site
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1)
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chain |
J |
| residue |
7 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN J 101
|
| source |
: AC9
|
|
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2)
|
chain |
J |
| residue |
10 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN J 101
|
| source |
: AC9
|
|
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3)
|
chain |
J |
| residue |
45 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN J 101
|
| source |
: AC9
|
|
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4)
|
chain |
J |
| residue |
46 |
| type |
|
| sequence |
C
|
| description |
binding site for residue ZN J 101
|
| source |
: AC9
|
|
|
5)
|
chain |
J |
| residue |
2-11 |
| type |
prosite |
| sequence |
IVPVRCFSCG
|
| description |
RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IVPVrCFSCG
|
| source |
prosite : PS01112
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