eF-site ID 5c4a-C
PDB Code 5c4a
Chain C

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Title Crystal structure of a transcribing RNA Polymerase II complex reveals a complete transcription bubble
Classification TRANSFERASE/RNA/DNA
Compound DNA-directed RNA polymerase II subunit RPB1
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c);
Sequence C:  EGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPT
LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYS
RDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSN
LMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGI
AKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQ
SKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQV
VVRGIDTLQKKVASILLALTQMDQD
Description


Functional site
1) chain C
residue 86
type
sequence C
description binding site for residue ZN C 401
source : AC6
2) chain C
residue 88
type
sequence C
description binding site for residue ZN C 401
source : AC6
3) chain C
residue 92
type
sequence C
description binding site for residue ZN C 401
source : AC6
4) chain C
residue 95
type
sequence C
description binding site for residue ZN C 401
source : AC6
5) chain C
residue 31-71
type prosite
sequence NSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLI
P
description RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
source prosite : PS00446

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