eF-site ID 5bx3-A
PDB Code 5bx3
Chain A

click to enlarge
Title Crystal structure of Thermoanaerobacterium xylanolyticum GH116 beta-glucosidase with deoxynojirimycin
Classification HYDROLASE
Compound beta-glucosidase
Source (F6BL85_THEXL)
Sequence A:  DKISHKIDIPDSAWTIGIGEKFKNAGHPNVKYPMIDDSYV
QGAPLGGFGAGTIGRTYNGGFSRWHLEIGKNKYTTVYANQ
FSVFQKVEGNKDGVAQVLYAGEPENGYLSSWKWDYPKESG
MYYALYPNSWYTYTNKDLPVQLAVKQFSPIIPYNYKETSY
PVAVFKWTAYNPTNKNVDVSIMFTWQNMIGFFGKQVNVNS
GNFNKIIKDKSKDSEIVAAVMGNISNDNEEWNGEYSIGVK
KVPGVDISYKAKFVTTGDGSDLWHEFSKNGILDNKDDETP
TKQDGIGSAIAVNFKLQPGQTIEVPFALSWDLPIMKFGGG
DKWYKMYTKYFGKNGKNSFAILKEALNNYQKWEKMIDDWQ
KPILSNKSKPDWYKTALFNELYYLADGGTAWENGKVGEKR
TNNMFGLLECFDYNYYETLDVRFYGSFPLVMLWPDIEKQV
MRQFADTINVQDSSEFKVGSNGAMAVKKVQGMIPHDLGSS
YALPWIKINAYDWQNPNIWKDLNSKYVLLVYRDYVLTGKT
DKEFLKYTWKSVKTALDKLKEMDKDNDGIPDNEGIPDQTY
DTWSMKGTSAYCGSLWLAALKAAQEIGKVLKDNEAYIKYN
EWYKIAQQNFEKELWNGEYYNFDTESDHKDSIMADQLAGQ
WYADILRLGDILPKDHVQKALKKIYEFNVMKFENGKMGAV
NGMRPDGIVDESDIQAQEVWTGVTYALASFMKYRGMTEEA
YNTAYGVYKMTYDKSGKGYWFRTPEAWTKDGNYRASMYMR
PLSIWSMEV
Description


Functional site

1) chain A
residue 441
type
sequence E
description binding site for residue NOJ A 901
source : AC1

2) chain A
residue 445
type
sequence Y
description binding site for residue NOJ A 901
source : AC1

3) chain A
residue 452
type
sequence D
description binding site for residue NOJ A 901
source : AC1

4) chain A
residue 507
type
sequence H
description binding site for residue NOJ A 901
source : AC1

5) chain A
residue 523
type
sequence Y
description binding site for residue NOJ A 901
source : AC1

6) chain A
residue 531
type
sequence W
description binding site for residue NOJ A 901
source : AC1

7) chain A
residue 591
type
sequence T
description binding site for residue NOJ A 901
source : AC1

8) chain A
residue 593
type
sequence D
description binding site for residue NOJ A 901
source : AC1

9) chain A
residue 732
type
sequence W
description binding site for residue NOJ A 901
source : AC1

10) chain A
residue 777
type
sequence E
description binding site for residue NOJ A 901
source : AC1

11) chain A
residue 786
type
sequence R
description binding site for residue NOJ A 901
source : AC1

12) chain A
residue 790
type
sequence Y
description binding site for residue NOJ A 901
source : AC1

13) chain A
residue 792
type
sequence R
description binding site for residue NOJ A 901
source : AC1

14) chain A
residue 432
type
sequence R
description binding site for residue GOL A 902
source : AC2

15) chain A
residue 433
type
sequence T
description binding site for residue GOL A 902
source : AC2

16) chain A
residue 434
type
sequence N
description binding site for residue GOL A 902
source : AC2

17) chain A
residue 421
type
sequence W
description binding site for residue GOL A 903
source : AC3

18) chain A
residue 434
type
sequence N
description binding site for residue GOL A 903
source : AC3

19) chain A
residue 435
type
sequence N
description binding site for residue GOL A 903
source : AC3

20) chain A
residue 471
type
sequence Q
description binding site for residue GOL A 903
source : AC3

21) chain A
residue 362
type
sequence G
description binding site for residue GOL A 904
source : AC4

22) chain A
residue 363
type
sequence K
description binding site for residue GOL A 904
source : AC4

23) chain A
residue 364
type
sequence N
description binding site for residue GOL A 904
source : AC4

24) chain A
residue 595
type
sequence W
description binding site for residue GOL A 905
source : AC5

25) chain A
residue 596
type
sequence S
description binding site for residue GOL A 905
source : AC5

26) chain A
residue 654
type
sequence F
description binding site for residue GOL A 905
source : AC5

27) chain A
residue 658
type
sequence S
description binding site for residue GOL A 905
source : AC5

28) chain A
residue 660
type
sequence H
description binding site for residue GOL A 905
source : AC5

29) chain A
residue 722
type
sequence D
description binding site for residue GOL A 905
source : AC5

30) chain A
residue 724
type
sequence S
description binding site for residue GOL A 905
source : AC5

31) chain A
residue 38
type
sequence D
description binding site for residue GOL A 906
source : AC6

32) chain A
residue 160
type
sequence W
description binding site for residue GOL A 906
source : AC6

33) chain A
residue 175
type
sequence K
description binding site for residue GOL A 906
source : AC6

34) chain A
residue 387
type
sequence D
description binding site for residue GOL A 906
source : AC6

35) chain A
residue 44
type
sequence W
description binding site for residue GOL A 907
source : AC7

36) chain A
residue 45
type
sequence T
description binding site for residue GOL A 907
source : AC7

37) chain A
residue 46
type
sequence I
description binding site for residue GOL A 907
source : AC7

38) chain A
residue 50
type
sequence E
description binding site for residue GOL A 907
source : AC7

39) chain A
residue 764
type
sequence Y
description binding site for residue GOL A 907
source : AC7

40) chain A
residue 765
type
sequence D
description binding site for residue GOL A 907
source : AC7

41) chain A
residue 766
type
sequence K
description binding site for residue GOL A 907
source : AC7

42) chain A
residue 772
type
sequence W
description binding site for residue GOL A 907
source : AC7

43) chain A
residue 566
type
sequence T
description binding site for residue GOL A 908
source : AC8

44) chain A
residue 569
type
sequence D
description binding site for residue GOL A 908
source : AC8

45) chain A
residue 570
type
sequence K
description binding site for residue GOL A 908
source : AC8

46) chain A
residue 434
type
sequence N
description binding site for residue GOL A 909
source : AC9

47) chain A
residue 471
type
sequence Q
description binding site for residue GOL A 909
source : AC9

48) chain A
residue 474
type
sequence R
description binding site for residue GOL A 909
source : AC9

49) chain A
residue 475
type
sequence Q
description binding site for residue GOL A 909
source : AC9

50) chain A
residue 478
type
sequence D
description binding site for residue GOL A 909
source : AC9

51) chain A
residue 559
type
sequence Y
description binding site for residue GOL A 909
source : AC9

52) chain A
residue 445
type
sequence Y
description binding site for residue GOL A 910
source : AD1

53) chain A
residue 593
type
sequence D
description binding site for residue GOL A 910
source : AD1

54) chain A
residue 727
type
sequence Q
description binding site for residue GOL A 910
source : AD1

55) chain A
residue 484
type
sequence D
description binding site for residue GOL A 911
source : AD2

56) chain A
residue 518
type
sequence I
description binding site for residue GOL A 911
source : AD2

57) chain A
residue 519
type
sequence K
description binding site for residue GOL A 911
source : AD2

58) chain A
residue 520
type
sequence I
description binding site for residue GOL A 911
source : AD2

59) chain A
residue 175
type
sequence K
description binding site for residue GOL A 912
source : AD3

60) chain A
residue 196
type
sequence K
description binding site for residue GOL A 912
source : AD3

61) chain A
residue 383
type
sequence E
description binding site for residue GOL A 912
source : AD3

62) chain A
residue 387
type
sequence D
description binding site for residue GOL A 912
source : AD3

63) chain A
residue 577
type
sequence D
description binding site for residue GOL A 913
source : AD4

64) chain A
residue 579
type
sequence D
description binding site for residue GOL A 913
source : AD4

65) chain A
residue 583
type
sequence D
description binding site for residue GOL A 913
source : AD4

66) chain A
residue 599
type
sequence G
description binding site for residue GOL A 913
source : AD4

67) chain A
residue 600
type
sequence T
description binding site for residue GOL A 913
source : AD4

68) chain A
residue 645
type
sequence E
description binding site for residue GOL A 913
source : AD4

69) chain A
residue 656
type
sequence T
description binding site for residue GOL A 913
source : AD4

70) chain A
residue 657
type
sequence E
description binding site for residue GOL A 913
source : AD4

71) chain A
residue 181
type
sequence I
description binding site for residue GOL A 914
source : AD5

72) chain A
residue 182
type
sequence P
description binding site for residue GOL A 914
source : AD5

73) chain A
residue 183
type
sequence Y
description binding site for residue GOL A 914
source : AD5

74) chain A
residue 184
type
sequence N
description binding site for residue GOL A 914
source : AD5

75) chain A
residue 385
type
sequence M
description binding site for residue GOL A 914
source : AD5

76) chain A
residue 723
type
sequence E
description binding site for residue GOL A 914
source : AD5

77) chain A
residue 647
type
sequence W
description binding site for residue GOL A 915
source : AD6

78) chain A
residue 649
type
sequence G
description binding site for residue GOL A 915
source : AD6

79) chain A
residue 688
type
sequence H
description binding site for residue GOL A 915
source : AD6

80) chain A
residue 60
type
sequence V
description binding site for residue GOL A 916
source : AD7

81) chain A
residue 61
type
sequence K
description binding site for residue GOL A 916
source : AD7

82) chain A
residue 62
type
sequence Y
description binding site for residue GOL A 916
source : AD7

83) chain A
residue 312
type
sequence K
description binding site for residue GOL A 916
source : AD7

84) chain A
residue 575
type
sequence D
description binding site for residue CA A 917
source : AD8

85) chain A
residue 577
type
sequence D
description binding site for residue CA A 917
source : AD8

86) chain A
residue 579
type
sequence D
description binding site for residue CA A 917
source : AD8

87) chain A
residue 581
type
sequence I
description binding site for residue CA A 917
source : AD8

88) chain A
residue 583
type
sequence D
description binding site for residue CA A 917
source : AD8

89) chain A
residue 81
type
sequence G
description binding site for residue EDO A 918
source : AD9

90) chain A
residue 82
type
sequence T
description binding site for residue EDO A 918
source : AD9

91) chain A
residue 95
type
sequence H
description binding site for residue EDO A 918
source : AD9

92) chain A
residue 98
type
sequence I
description binding site for residue EDO A 918
source : AD9

93) chain A
residue 415
type
sequence A
description binding site for residue EDO A 918
source : AD9

94) chain A
residue 416
type
sequence D
description binding site for residue EDO A 918
source : AD9

95) chain A
residue 417
type
sequence G
description binding site for residue EDO A 918
source : AD9

96) chain A
residue 418
type
sequence G
description binding site for residue EDO A 918
source : AD9

97) chain A
residue 419
type
sequence T
description binding site for residue EDO A 918
source : AD9


Display surface

Download
Links