eF-site ID 5bpk-D
PDB Code 5bpk
Chain D

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Title Varying binding modes of inhibitors and structural differences in the binding pockets of different gamma-glutamyltranspeptidases
Classification HYDROLASE
Compound Gamma-glutamyltranspeptidase (Ggt)
Source Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) (O25743_HELPY)
Sequence D:  TTHYSVADRWGNAVSVTYTINASYGSAASIDGAGFLLNNE
MDDFSIKPGNPNLYGLVGGDANAIEANKRPLSSMSPTIVL
KNNKVFLVVGSPGGSRIITTVLQVISNVIDYNMNISEAVS
APRFHMQWLPDELRIEKFGMPADVKDNLTKMGYQIVTKPV
MGDVNAIQVLPKTKGSVFYGSTDPRKEF
Description


Functional site

1) chain D
residue 499
type
sequence S
description binding site for residue EDO A 404
source : AC4

2) chain D
residue 526
type
sequence N
description binding site for residue EDO C 710
source : AE2

3) chain D
residue 389
type
sequence W
description binding site for residue EDO B 402
source : AE5

4) chain D
residue 389
type
sequence W
description binding site for residue EDO B 403
source : AE6

5) chain D
residue 391
type
sequence N
description binding site for residue EDO B 403
source : AE6

6) chain D
residue 565
type
sequence K
description binding site for residue EDO B 405
source : AE7

7) chain D
residue 388
type
sequence R
description binding site for residue EDO B 412
source : AF5

8) chain D
residue 499
type
sequence S
description binding site for residue EDO D 702
source : AF7

9) chain D
residue 510
type
sequence D
description binding site for residue EDO D 703
source : AF8

10) chain D
residue 511
type
sequence E
description binding site for residue EDO D 703
source : AF8

11) chain D
residue 533
type
sequence Q
description binding site for residue EDO D 703
source : AF8

12) chain D
residue 521
type
sequence A
description binding site for residue EDO D 704
source : AF9

13) chain D
residue 525
type
sequence D
description binding site for residue EDO D 704
source : AF9

14) chain D
residue 501
type
sequence P
description binding site for residue EDO D 705
source : AG1

15) chain D
residue 502
type
sequence R
description binding site for residue EDO D 705
source : AG1

16) chain D
residue 503
type
sequence F
description binding site for residue EDO D 705
source : AG1

17) chain D
residue 514
type
sequence I
description binding site for residue EDO D 705
source : AG1

18) chain D
residue 515
type
sequence E
description binding site for residue EDO D 705
source : AG1

19) chain D
residue 518
type
sequence G
description binding site for residue EDO D 705
source : AG1

20) chain D
residue 495
type
sequence S
description binding site for residue EDO D 706
source : AG2

21) chain D
residue 560
type
sequence S
description binding site for residue EDO D 706
source : AG2

22) chain D
residue 561
type
sequence T
description binding site for residue EDO D 706
source : AG2

23) chain D
residue 485
type
sequence S
description binding site for residue EDO D 707
source : AG3

24) chain D
residue 490
type
sequence Y
description binding site for residue EDO D 707
source : AG3

25) chain D
residue 422
type
sequence D
description binding site for residue EDO D 708
source : AG4

26) chain D
residue 423
type
sequence F
description binding site for residue EDO D 708
source : AG4

27) chain D
residue 429
type
sequence N
description binding site for residue EDO D 708
source : AG4

28) chain D
residue 431
type
sequence N
description binding site for residue EDO D 708
source : AG4

29) chain D
residue 435
type
sequence L
description binding site for residue EDO D 708
source : AG4

30) chain D
residue 441
type
sequence N
description binding site for residue EDO D 708
source : AG4

31) chain D
residue 387
type
sequence D
description binding site for residue EDO D 709
source : AG5

32) chain D
residue 388
type
sequence R
description binding site for residue EDO D 709
source : AG5

33) chain D
residue 389
type
sequence W
description binding site for residue EDO D 709
source : AG5

34) chain D
residue 390
type
sequence G
description binding site for residue EDO D 709
source : AG5

35) chain D
residue 555
type
sequence S
description binding site for residue EDO D 709
source : AG5

36) chain D
residue 557
type
sequence F
description binding site for residue EDO D 709
source : AG5

37) chain D
residue 522
type
sequence D
description binding site for residue EDO D 710
source : AG6

38) chain D
residue 525
type
sequence D
description binding site for residue EDO D 710
source : AG6

39) chain D
residue 475
type
sequence R
description binding site for residue EDO D 711
source : AG7

40) chain D
residue 513
type
sequence R
description binding site for residue EDO D 711
source : AG7

41) chain D
residue 381
type
sequence T
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

42) chain D
residue 397
type
sequence Y
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

43) chain D
residue 398
type
sequence T
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

44) chain D
residue 400
type
sequence N
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

45) chain D
residue 419
type
sequence E
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

46) chain D
residue 422
type
sequence D
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

47) chain D
residue 433
type
sequence Y
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

48) chain D
residue 451
type
sequence S
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

49) chain D
residue 452
type
sequence S
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

50) chain D
residue 453
type
sequence M
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

51) chain D
residue 471
type
sequence P
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

52) chain D
residue 472
type
sequence G
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

53) chain D
residue 473
type
sequence G
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

54) chain D
residue 476
type
sequence I
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG8

55) chain D
residue 381
type
sequence T
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

56) chain D
residue 397
type
sequence Y
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

57) chain D
residue 398
type
sequence T
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

58) chain D
residue 400
type
sequence N
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

59) chain D
residue 419
type
sequence E
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

60) chain D
residue 422
type
sequence D
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

61) chain D
residue 433
type
sequence Y
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

62) chain D
residue 451
type
sequence S
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

63) chain D
residue 452
type
sequence S
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

64) chain D
residue 453
type
sequence M
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

65) chain D
residue 471
type
sequence P
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

66) chain D
residue 472
type
sequence G
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

67) chain D
residue 473
type
sequence G
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9

68) chain D
residue 476
type
sequence I
description binding site for Di-peptide 4UD D 701 and THR D 380
source : AG9


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