eF-site ID 5b25-C
PDB Code 5b25
Chain C

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Title Crystal structure of human PDE1B with inhibitor 3
Classification HYDROLASE/HYDROLASE INHIBITOR
Compound Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B
Source Homo sapiens (Human) (PDE1B_HUMAN)
Sequence C:  TYSTAVLNCLKNLDLWCFDVFSLNQAADDHALRTIVFELL
TRHNLISRFKIPTVFLMSFLDALETGYGKYKNPYHNQIHA
ADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHT
GTTNSFHIQTKSECAIVYNDRSVLENHHISSVFRLMQDDE
MNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKT
ALQQLERIDKPKALSLLLHAADISHPTKQWLVHSRWTKAL
MEEFFRQGDKEAELGLPFSPLCDRTSTLVAQSQIGFIDFI
VEPTFSVLTDVAEKSVQPLAGDPNPDVVSFRSTWVKRIQE
NKQKWKERAASG
Description


Functional site

1) chain C
residue 441
type
sequence E
description binding site for residue 4QJ A 603
source : AC3

2) chain C
residue 474
type
sequence P
description binding site for residue 4QJ A 603
source : AC3

3) chain C
residue 475
type
sequence N
description binding site for residue 4QJ A 603
source : AC3

4) chain C
residue 478
type
sequence V
description binding site for residue 4QJ A 603
source : AC3

5) chain C
residue 479
type
sequence V
description binding site for residue 4QJ A 603
source : AC3

6) chain C
residue 351
type
sequence Q
description binding site for residue SO4 A 604
source : AC4

7) chain C
residue 221
type
sequence P
description binding site for residue SO4 A 605
source : AC5

8) chain C
residue 394
type
sequence R
description binding site for residue SO4 A 605
source : AC5

9) chain C
residue 476
type
sequence P
description binding site for residue GOL A 607
source : AC7

10) chain C
residue 227
type
sequence H
description binding site for residue ZN C 601
source : AD7

11) chain C
residue 263
type
sequence H
description binding site for residue ZN C 601
source : AD7

12) chain C
residue 264
type
sequence D
description binding site for residue ZN C 601
source : AD7

13) chain C
residue 370
type
sequence D
description binding site for residue ZN C 601
source : AD7

14) chain C
residue 264
type
sequence D
description binding site for residue MG C 602
source : AD8

15) chain C
residue 222
type
sequence Y
description binding site for residue 4QJ C 603
source : AD9

16) chain C
residue 371
type
sequence I
description binding site for residue 4QJ C 603
source : AD9

17) chain C
residue 373
type
sequence H
description binding site for residue 4QJ C 603
source : AD9

18) chain C
residue 388
type
sequence L
description binding site for residue 4QJ C 603
source : AD9

19) chain C
residue 392
type
sequence F
description binding site for residue 4QJ C 603
source : AD9

20) chain C
residue 409
type
sequence L
description binding site for residue 4QJ C 603
source : AD9

21) chain C
residue 417
type
sequence V
description binding site for residue 4QJ C 603
source : AD9

22) chain C
residue 420
type
sequence S
description binding site for residue 4QJ C 603
source : AD9

23) chain C
residue 421
type
sequence Q
description binding site for residue 4QJ C 603
source : AD9

24) chain C
residue 423
type
sequence G
description binding site for residue 4QJ C 603
source : AD9

25) chain C
residue 424
type
sequence F
description binding site for residue 4QJ C 603
source : AD9

26) chain C
residue 427
type
sequence F
description binding site for residue 4QJ C 603
source : AD9

27) chain C
residue 196
type
sequence R
description binding site for residue SO4 C 604
source : AE1

28) chain C
residue 249
type
sequence S
description binding site for residue SO4 C 604
source : AE1

29) chain C
residue 250
type
sequence E
description binding site for residue SO4 C 604
source : AE1

30) chain C
residue 316
type
sequence T
description binding site for residue SO4 C 605
source : AE2

31) chain C
residue 317
type
sequence K
description binding site for residue SO4 C 605
source : AE2

32) chain C
residue 344
type
sequence K
description binding site for residue SO4 C 606
source : AE3

33) chain C
residue 347
type
sequence K
description binding site for residue SO4 C 606
source : AE3

34) chain C
residue 271
type
sequence T
description binding site for residue GOL C 607
source : AE4

35) chain C
residue 392
type
sequence F
description binding site for residue GOL C 607
source : AE4

36) chain C
residue 407
type
sequence S
description binding site for residue GOL C 607
source : AE4

37) chain C
residue 408
type
sequence P
description binding site for residue GOL C 607
source : AE4

38) chain C
residue 410
type
sequence C
description binding site for residue GOL C 607
source : AE4

39) chain C
residue 415
type
sequence T
description binding site for residue GOL C 608
source : AE5

40) chain C
residue 417
type
sequence V
description binding site for residue GOL C 608
source : AE5

41) chain C
residue 418
type
sequence A
description binding site for residue GOL C 608
source : AE5

42) chain C
residue 419
type
sequence Q
description binding site for residue GOL C 608
source : AE5

43) chain C
residue 223
type ACT_SITE
sequence H
description Proton donor => ECO:0000250|UniProtKB:O76083
source Swiss-Prot : SWS_FT_FI1

44) chain C
residue 263
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1TAZ, ECO:0007744|PDB:4NPV, ECO:0007744|PDB:4NPW
source Swiss-Prot : SWS_FT_FI2

45) chain C
residue 264
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1TAZ, ECO:0007744|PDB:4NPV, ECO:0007744|PDB:4NPW
source Swiss-Prot : SWS_FT_FI2

46) chain C
residue 370
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1TAZ, ECO:0007744|PDB:4NPV, ECO:0007744|PDB:4NPW
source Swiss-Prot : SWS_FT_FI2

47) chain C
residue 227
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1TAZ, ECO:0007744|PDB:4NPV, ECO:0007744|PDB:4NPW
source Swiss-Prot : SWS_FT_FI2

48) chain C
residue 489
type MOD_RES
sequence I
description Phosphoserine => ECO:0000250|UniProtKB:Q01065
source Swiss-Prot : SWS_FT_FI3


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