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|
eF-site ID
|
5ay8-D |
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PDB Code
|
5ay8 |
|
Chain
|
D |
|
click to enlarge
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Title
|
Crystal structure of human nucleosome containing H3.Y |
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Classification
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DNA BINDING PROTEIN/DNA |
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Compound
|
H3.Y |
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Source
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(5AY8) |
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Sequence
|
D: |
RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFER
IAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVS
EGTKAVTKYTSA
|
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Description
|
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Functional site
|
|
|
1)
|
chain |
D |
| residue |
120 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:16307923, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:16713563
|
| source |
Swiss-Prot : SWS_FT_FI18
|
|
|
2)
|
chain |
D |
| residue |
34 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:21726816
|
| source |
Swiss-Prot : SWS_FT_FI20
|
|
|
3)
|
chain |
D |
| residue |
120 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84243
|
| source |
Swiss-Prot : SWS_FT_FI8
|
|
|
4)
|
chain |
D |
| residue |
92-114 |
| type |
prosite |
| sequence |
REIQTAVRLLLPGELAKHAVSEG
|
| description |
HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
|
| source |
prosite : PS00357
|
|
|
5)
|
chain |
D |
| residue |
115 |
| type |
CROSSLNK |
| sequence |
T
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:19818714
|
| source |
Swiss-Prot : SWS_FT_FI15
|
|
|
|