|
|
eF-site ID
|
5akn-BCDEGHJ |
|
PDB Code
|
5akn |
|
Chain
|
B, C, D, E, G, H, J |
|
click to enlarge
|
|
|
Title
|
THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE non-CODING STRAND B AND IN THE PRESENCE OF 2MM MN |
|
Classification
|
HYDROLASE/DNA |
|
Compound
|
HOMING ENDONUCLEASE I-DMOI |
|
Source
|
Desulfurococcus mobilis (5AKN) |
|
|
Sequence
|
B: |
GCCTTGCCGGGTAA
|
| C: |
GTTCCGGCGCG
|
| D: |
CGCGCCGGAACTTAC
|
| E: |
CCGGCAAGGC
|
| G: |
GCCTTGCCGGGTAA
|
| H: |
GTTCCGGCGCGCGCGCCGGAACTTAC
|
| J: |
CCGGCAAGGC
|
|
|
Description
|
|
Functional site
|
|
|
1)
|
chain |
B |
| residue |
14 |
| type |
|
| sequence |
A
|
| description |
BINDING SITE FOR RESIDUE MN A 1184
|
| source |
: AC1
|
|
|
2)
|
chain |
E |
| residue |
16 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE MN A 1184
|
| source |
: AC1
|
|
|
3)
|
chain |
C |
| residue |
15 |
| type |
|
| sequence |
G
|
| description |
BINDING SITE FOR RESIDUE MN A 1185
|
| source |
: AC2
|
|
|
4)
|
chain |
D |
| residue |
15 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE MN A 1185
|
| source |
: AC2
|
|
|
5)
|
chain |
G |
| residue |
14 |
| type |
|
| sequence |
A
|
| description |
BINDING SITE FOR RESIDUE MN F 1189
|
| source |
: AC3
|
|
|
6)
|
chain |
J |
| residue |
16 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE MN F 1189
|
| source |
: AC3
|
|
|
7)
|
chain |
H |
| residue |
15 |
| type |
|
| sequence |
G
|
| description |
BINDING SITE FOR RESIDUE MN F 1190
|
| source |
: AC4
|
|
|
8)
|
chain |
H |
| residue |
1040 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE MN F 1190
|
| source |
: AC4
|
|
|
|