eF-site ID 5akn-AF
PDB Code 5akn
Chain A, F

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Title THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE non-CODING STRAND B AND IN THE PRESENCE OF 2MM MN
Classification HYDROLASE/DNA
Compound HOMING ENDONUCLEASE I-DMOI
Source Desulfurococcus mobilis (5AKN)
Sequence A:  NVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKSE
NLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSK
KLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKRL
RIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNI
SLRDRIKFVHTILSSHLN
F:  ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKS
ENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSS
KKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKR
LRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN
ISLRDRIKFVHTILSSHLNPLPPE
Description


Functional site

1) chain A
residue 21
type
sequence D
description BINDING SITE FOR RESIDUE MN A 1184
source : AC1

2) chain A
residue 116
type
sequence A
description BINDING SITE FOR RESIDUE MN A 1184
source : AC1

3) chain A
residue 19
type
sequence I
description BINDING SITE FOR RESIDUE MN A 1185
source : AC2

4) chain A
residue 20
type
sequence G
description BINDING SITE FOR RESIDUE MN A 1185
source : AC2

5) chain A
residue 117
type
sequence E
description BINDING SITE FOR RESIDUE MN A 1185
source : AC2

6) chain F
residue 21
type
sequence D
description BINDING SITE FOR RESIDUE MN F 1189
source : AC3

7) chain F
residue 116
type
sequence A
description BINDING SITE FOR RESIDUE MN F 1189
source : AC3

8) chain F
residue 19
type
sequence I
description BINDING SITE FOR RESIDUE MN F 1190
source : AC4

9) chain F
residue 20
type
sequence G
description BINDING SITE FOR RESIDUE MN F 1190
source : AC4

10) chain F
residue 117
type
sequence E
description BINDING SITE FOR RESIDUE MN F 1190
source : AC4

11) chain A
residue 21
type ACT_SITE
sequence D
description
source Swiss-Prot : SWS_FT_FI1

12) chain A
residue 117
type ACT_SITE
sequence E
description
source Swiss-Prot : SWS_FT_FI1

13) chain F
residue 21
type ACT_SITE
sequence D
description
source Swiss-Prot : SWS_FT_FI1

14) chain F
residue 117
type ACT_SITE
sequence E
description
source Swiss-Prot : SWS_FT_FI1


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