eF-site ID 5akn-ABCDEFGHJ
PDB Code 5akn
Chain A, B, C, D, E, F, G, H, J

click to enlarge
Title THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE non-CODING STRAND B AND IN THE PRESENCE OF 2MM MN
Classification HYDROLASE/DNA
Compound HOMING ENDONUCLEASE I-DMOI
Source Desulfurococcus mobilis (5AKN)
Sequence A:  NVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKSE
NLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSK
KLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKRL
RIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNI
SLRDRIKFVHTILSSHLN
B:  GCCTTGCCGGGTAA
C:  GTTCCGGCGCG
D:  CGCGCCGGAACTTAC
E:  CCGGCAAGGC
F:  ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKS
ENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSS
KKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKR
LRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN
ISLRDRIKFVHTILSSHLNPLPPE
G:  GCCTTGCCGGGTAA
H:  GTTCCGGCGCGCGCGCCGGAACTTAC
J:  CCGGCAAGGC
Description


Functional site

1) chain A
residue 21
type
sequence D
description BINDING SITE FOR RESIDUE MN A 1184
source : AC1

2) chain A
residue 116
type
sequence A
description BINDING SITE FOR RESIDUE MN A 1184
source : AC1

3) chain B
residue 14
type
sequence A
description BINDING SITE FOR RESIDUE MN A 1184
source : AC1

4) chain E
residue 16
type
sequence C
description BINDING SITE FOR RESIDUE MN A 1184
source : AC1

5) chain A
residue 19
type
sequence I
description BINDING SITE FOR RESIDUE MN A 1185
source : AC2

6) chain A
residue 20
type
sequence G
description BINDING SITE FOR RESIDUE MN A 1185
source : AC2

7) chain A
residue 117
type
sequence E
description BINDING SITE FOR RESIDUE MN A 1185
source : AC2

8) chain C
residue 15
type
sequence G
description BINDING SITE FOR RESIDUE MN A 1185
source : AC2

9) chain D
residue 15
type
sequence C
description BINDING SITE FOR RESIDUE MN A 1185
source : AC2

10) chain F
residue 21
type
sequence D
description BINDING SITE FOR RESIDUE MN F 1189
source : AC3

11) chain F
residue 116
type
sequence A
description BINDING SITE FOR RESIDUE MN F 1189
source : AC3

12) chain G
residue 14
type
sequence A
description BINDING SITE FOR RESIDUE MN F 1189
source : AC3

13) chain J
residue 16
type
sequence C
description BINDING SITE FOR RESIDUE MN F 1189
source : AC3

14) chain F
residue 19
type
sequence I
description BINDING SITE FOR RESIDUE MN F 1190
source : AC4

15) chain F
residue 20
type
sequence G
description BINDING SITE FOR RESIDUE MN F 1190
source : AC4

16) chain F
residue 117
type
sequence E
description BINDING SITE FOR RESIDUE MN F 1190
source : AC4

17) chain H
residue 15
type
sequence G
description BINDING SITE FOR RESIDUE MN F 1190
source : AC4

18) chain H
residue 1040
type
sequence C
description BINDING SITE FOR RESIDUE MN F 1190
source : AC4

19) chain A
residue 21
type ACT_SITE
sequence D
description
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 117
type ACT_SITE
sequence E
description
source Swiss-Prot : SWS_FT_FI1

21) chain F
residue 21
type ACT_SITE
sequence D
description
source Swiss-Prot : SWS_FT_FI1

22) chain F
residue 117
type ACT_SITE
sequence E
description
source Swiss-Prot : SWS_FT_FI1


Display surface

Download
Links