eF-site ID 5akm-AFK
PDB Code 5akm
Chain A, F, K

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Title THE CRYSTAL STRUCTURE OF I-DMOI G20S IN COMPLEX WITH ITS TARGET DNA IN THE PRESENCE OF 2MM MG
Classification HYDROLASE
Compound HOMING ENDONUCLEASE I-DMOI
Source Desulfurococcus mobilis (5AKM)
Sequence A:  ENVSGISAYLLGLIISDGGLYKLKYKGNRSEYRVVITQKS
ENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSS
KKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKR
LRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN
ISLRDRIKFVHTILSSHLNPLPP
F:  NVSGISAYLLGLIISDGGLYKLKYKGNRSEYRVVITQKSE
NLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSK
KLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRL
RIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNI
SLRDRIKFVHTILS
K:  NENVSGISAYLLGLIISDGGLYKLKYKGNRSEYRVVITQK
SENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVS
SKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLK
RLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVL
NISLRDRIKFVHTILSSH
Description


Functional site

1) chain A
residue 111
type
sequence K
description BINDING SITE FOR RESIDUE ACT A 1188
source : AC1

2) chain A
residue 183
type
sequence N
description BINDING SITE FOR RESIDUE ACT A 1188
source : AC1

3) chain A
residue 99
type
sequence R
description BINDING SITE FOR RESIDUE ACT A 1189
source : AC2

4) chain A
residue 131
type
sequence N
description BINDING SITE FOR RESIDUE ACT A 1189
source : AC2

5) chain F
residue 114
type
sequence Y
description BINDING SITE FOR RESIDUE ACT F 1180
source : AC3

6) chain F
residue 120
type
sequence K
description BINDING SITE FOR RESIDUE ACT F 1180
source : AC3

7) chain F
residue 21
type
sequence D
description BINDING SITE FOR RESIDUE MG F 1181
source : AC4

8) chain F
residue 116
type
sequence A
description BINDING SITE FOR RESIDUE MG F 1181
source : AC4

9) chain F
residue 20
type
sequence S
description BINDING SITE FOR RESIDUE MG F 1182
source : AC5

10) chain F
residue 117
type
sequence E
description BINDING SITE FOR RESIDUE MG F 1182
source : AC5

11) chain A
residue 21
type
sequence D
description BINDING SITE FOR RESIDUE MG A 1190
source : AC6

12) chain A
residue 116
type
sequence A
description BINDING SITE FOR RESIDUE MG A 1190
source : AC6

13) chain A
residue 117
type
sequence E
description BINDING SITE FOR RESIDUE MG A 1190
source : AC6

14) chain K
residue 21
type
sequence D
description BINDING SITE FOR RESIDUE MG K 1182
source : AC7

15) chain K
residue 116
type
sequence A
description BINDING SITE FOR RESIDUE MG K 1182
source : AC7

16) chain A
residue 21
type ACT_SITE
sequence D
description
source Swiss-Prot : SWS_FT_FI1

17) chain A
residue 117
type ACT_SITE
sequence E
description
source Swiss-Prot : SWS_FT_FI1

18) chain F
residue 21
type ACT_SITE
sequence D
description
source Swiss-Prot : SWS_FT_FI1

19) chain F
residue 117
type ACT_SITE
sequence E
description
source Swiss-Prot : SWS_FT_FI1

20) chain K
residue 21
type ACT_SITE
sequence D
description
source Swiss-Prot : SWS_FT_FI1

21) chain K
residue 117
type ACT_SITE
sequence E
description
source Swiss-Prot : SWS_FT_FI1


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