|
|
eF-site ID
|
5akf-ABCDEFGH |
|
PDB Code
|
5akf |
|
Chain
|
A, B, C, D, E, F, G, H |
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click to enlarge
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Title
|
THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2MM MN |
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Classification
|
HYDROLASE |
|
Compound
|
HOMING ENDONUCLEASE I-DMOI |
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Source
|
Desulfurococcus mobilis (5AKF) |
|
|
Sequence
|
A: |
ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKS
ENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSS
KKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKR
LRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN
ISLRDRIKFVHTILSSHLN
|
| B: |
GCCTTGCCGGGTAA
|
| C: |
GTTCCGGCGCG
|
| D: |
CGCGCCGGAACTTACCCGGCAAGGC
|
| E: |
ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITAKS
ENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSS
KKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDMTLKR
LRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLN
ISLRDRIKFVHTILSS
|
| F: |
GCCTTGCCGGGTAA
|
| G: |
GTTCCGGCGCG
|
| H: |
CGCGCCGGAACTTACCCGGCAAGGC
|
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Description
|
|
Functional site
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|
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1)
|
chain |
A |
| residue |
182 |
| type |
|
| sequence |
L
|
| description |
BINDING SITE FOR RESIDUE ACT A 1184
|
| source |
: AC1
|
|
|
2)
|
chain |
A |
| residue |
183 |
| type |
|
| sequence |
N
|
| description |
BINDING SITE FOR RESIDUE ACT A 1184
|
| source |
: AC1
|
|
|
3)
|
chain |
B |
| residue |
6 |
| type |
|
| sequence |
G
|
| description |
BINDING SITE FOR RESIDUE CL B 1015
|
| source |
: AC2
|
|
|
4)
|
chain |
D |
| residue |
22 |
| type |
|
| sequence |
A
|
| description |
BINDING SITE FOR RESIDUE CL B 1015
|
| source |
: AC2
|
|
|
5)
|
chain |
A |
| residue |
21 |
| type |
|
| sequence |
D
|
| description |
BINDING SITE FOR RESIDUE MN A 1185
|
| source |
: AC4
|
|
|
6)
|
chain |
A |
| residue |
116 |
| type |
|
| sequence |
A
|
| description |
BINDING SITE FOR RESIDUE MN A 1185
|
| source |
: AC4
|
|
|
7)
|
chain |
B |
| residue |
14 |
| type |
|
| sequence |
A
|
| description |
BINDING SITE FOR RESIDUE MN A 1185
|
| source |
: AC4
|
|
|
8)
|
chain |
D |
| residue |
16 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE MN A 1185
|
| source |
: AC4
|
|
|
9)
|
chain |
E |
| residue |
21 |
| type |
|
| sequence |
D
|
| description |
BINDING SITE FOR RESIDUE MN E 1182
|
| source |
: AC5
|
|
|
10)
|
chain |
E |
| residue |
116 |
| type |
|
| sequence |
A
|
| description |
BINDING SITE FOR RESIDUE MN E 1182
|
| source |
: AC5
|
|
|
11)
|
chain |
F |
| residue |
14 |
| type |
|
| sequence |
A
|
| description |
BINDING SITE FOR RESIDUE MN E 1182
|
| source |
: AC5
|
|
|
12)
|
chain |
H |
| residue |
16 |
| type |
|
| sequence |
C
|
| description |
BINDING SITE FOR RESIDUE MN E 1182
|
| source |
: AC5
|
|
|
13)
|
chain |
A |
| residue |
21 |
| type |
ACT_SITE |
| sequence |
D
|
| description |
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
14)
|
chain |
A |
| residue |
117 |
| type |
ACT_SITE |
| sequence |
E
|
| description |
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
15)
|
chain |
E |
| residue |
21 |
| type |
ACT_SITE |
| sequence |
D
|
| description |
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
16)
|
chain |
E |
| residue |
117 |
| type |
ACT_SITE |
| sequence |
E
|
| description |
|
| source |
Swiss-Prot : SWS_FT_FI1
|
|
|
|