eF-site ID 5a80-B
PDB Code 5a80
Chain B

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Title Crystal structure of human JMJD2A in complex with compound 40
Classification OXIDOREDUCTASE
Compound LYSINE-SPECIFIC DEMETHYLASE 4A
Source Homo sapiens (Human) (KDM4A_HUMAN)
Sequence B:  NPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVV
PPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFTQYNIQ
KKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFN
PPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITI
EGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSW
YSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPL
MLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAES
TNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPER
YKLWKAGKDNTVIDHTLPTPEAAEF
Description


Functional site

1) chain B
residue 105
type
sequence K
description BINDING SITE FOR RESIDUE SO4 A 1355
source : AC1

2) chain B
residue 227
type
sequence F
description BINDING SITE FOR RESIDUE SO4 B 1354
source : AC2

3) chain B
residue 228
type
sequence P
description BINDING SITE FOR RESIDUE SO4 B 1354
source : AC2

4) chain B
residue 229
type
sequence G
description BINDING SITE FOR RESIDUE SO4 B 1354
source : AC2

5) chain B
residue 230
type
sequence S
description BINDING SITE FOR RESIDUE SO4 B 1354
source : AC2

6) chain B
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE MN B 1355
source : AC4

7) chain B
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE MN B 1355
source : AC4

8) chain B
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE MN B 1355
source : AC4

9) chain B
residue 86
type
sequence N
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

10) chain B
residue 132
type
sequence Y
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

11) chain B
residue 135
type
sequence D
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

12) chain B
residue 177
type
sequence Y
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

13) chain B
residue 185
type
sequence F
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

14) chain B
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

15) chain B
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

16) chain B
residue 206
type
sequence K
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

17) chain B
residue 208
type
sequence W
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

18) chain B
residue 241
type
sequence K
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

19) chain B
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE 9CJ B 1356
source : AC6

20) chain B
residue 234
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1357
source : AC8

21) chain B
residue 240
type
sequence H
description BINDING SITE FOR RESIDUE ZN B 1357
source : AC8

22) chain B
residue 306
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1357
source : AC8

23) chain B
residue 308
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 1357
source : AC8

24) chain B
residue 170
type
sequence G
description BINDING SITE FOR RESIDUE EDO B 1358
source : BC1

25) chain B
residue 175
type
sequence Y
description BINDING SITE FOR RESIDUE EDO B 1358
source : BC1

26) chain B
residue 177
type
sequence Y
description BINDING SITE FOR RESIDUE EDO B 1358
source : BC1

27) chain B
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE EDO B 1358
source : BC1

28) chain B
residue 196
type
sequence S
description BINDING SITE FOR RESIDUE EDO B 1358
source : BC1

29) chain B
residue 290
type
sequence N
description BINDING SITE FOR RESIDUE EDO B 1358
source : BC1

30) chain B
residue 83
type
sequence T
description BINDING SITE FOR RESIDUE EDO B 1359
source : BC2

31) chain B
residue 230
type
sequence S
description BINDING SITE FOR RESIDUE EDO B 1359
source : BC2

32) chain B
residue 243
type
sequence T
description BINDING SITE FOR RESIDUE EDO B 1359
source : BC2

33) chain B
residue 16
type
sequence T
description BINDING SITE FOR RESIDUE EDO B 1360
source : BC7

34) chain B
residue 17
type
sequence F
description BINDING SITE FOR RESIDUE EDO B 1360
source : BC7

35) chain B
residue 18
type
sequence Y
description BINDING SITE FOR RESIDUE EDO B 1360
source : BC7

36) chain B
residue 224
type
sequence K
description BINDING SITE FOR RESIDUE EDO B 1361
source : BC8

37) chain B
residue 235
type
sequence E
description BINDING SITE FOR RESIDUE EDO B 1361
source : BC8

38) chain B
residue 236
type
sequence A
description BINDING SITE FOR RESIDUE EDO B 1361
source : BC8

39) chain B
residue 237
type
sequence F
description BINDING SITE FOR RESIDUE EDO B 1361
source : BC8

40) chain B
residue 238
type
sequence L
description BINDING SITE FOR RESIDUE EDO B 1361
source : BC8

41) chain B
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE EDO B 1362
source : BC9

42) chain B
residue 170
type catalytic
sequence G
description 370
source MCSA : MCSA2

43) chain B
residue 177
type catalytic
sequence Y
description 370
source MCSA : MCSA2

44) chain B
residue 188
type catalytic
sequence H
description 370
source MCSA : MCSA2

45) chain B
residue 190
type catalytic
sequence E
description 370
source MCSA : MCSA2

46) chain B
residue 276
type catalytic
sequence H
description 370
source MCSA : MCSA2

47) chain B
residue 288
type catalytic
sequence S
description 370
source MCSA : MCSA2

48) chain B
residue 132
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

49) chain B
residue 198
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

50) chain B
residue 206
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

51) chain B
residue 188
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI2

52) chain B
residue 276
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI2

53) chain B
residue 190
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI3

54) chain B
residue 234
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

55) chain B
residue 240
type BINDING
sequence H
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

56) chain B
residue 306
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

57) chain B
residue 308
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

58) chain B
residue 241
type BINDING
sequence K
description BINDING => ECO:0000250|UniProtKB:B2RXH2
source Swiss-Prot : SWS_FT_FI5


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