eF-site ID 5a7s-AB PDB Code 5a7s Chain A, B click to enlarge Title Crystal structure of human JMJD2A in complex with compound 44 Classification OXIDOREDUCTASE Compound LYSINE-SPECIFIC DEMETHYLASE 4A Source Homo sapiens (Human) (KDM4A_HUMAN) Sequence A:  PSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVP PKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFTQYNIQK KAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTFNP PIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGITIE GVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWY SVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLM LKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAEST NFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPERY KLWKAGKDNTVIDHTLPTPEAAEFL B:  ESETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAG LAKVVPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFT QYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWK NLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKE SGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFG EPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMT LISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF NCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRK FQPERYKLWKAGKDNTVIDHTLPTPEAAEFL Description Functional site 1) chain B residue 188 type sequence H description BINDING SITE FOR RESIDUE MN B 1355 source : AC1 2) chain B residue 190 type sequence E description BINDING SITE FOR RESIDUE MN B 1355 source : AC1 3) chain B residue 276 type sequence H description BINDING SITE FOR RESIDUE MN B 1355 source : AC1 4) chain A residue 188 type sequence H description BINDING SITE FOR RESIDUE MN A 1355 source : AC2 5) chain A residue 190 type sequence E description BINDING SITE FOR RESIDUE MN A 1355 source : AC2 6) chain A residue 276 type sequence H description BINDING SITE FOR RESIDUE MN A 1355 source : AC2 7) chain B residue 234 type sequence C description BINDING SITE FOR RESIDUE ZN B 1356 source : AC3 8) chain B residue 240 type sequence H description BINDING SITE FOR RESIDUE ZN B 1356 source : AC3 9) chain B residue 306 type sequence C description BINDING SITE FOR RESIDUE ZN B 1356 source : AC3 10) chain B residue 308 type sequence C description BINDING SITE FOR RESIDUE ZN B 1356 source : AC3 11) chain A residue 234 type sequence C description BINDING SITE FOR RESIDUE ZN A 1356 source : AC4 12) chain A residue 240 type sequence H description BINDING SITE FOR RESIDUE ZN A 1356 source : AC4 13) chain A residue 306 type sequence C description BINDING SITE FOR RESIDUE ZN A 1356 source : AC4 14) chain A residue 308 type sequence C description BINDING SITE FOR RESIDUE ZN A 1356 source : AC4 15) chain B residue 170 type sequence G description BINDING SITE FOR RESIDUE EDO B 1357 source : AC5 16) chain B residue 177 type sequence Y description BINDING SITE FOR RESIDUE EDO B 1357 source : AC5 17) chain B residue 190 type sequence E description BINDING SITE FOR RESIDUE EDO B 1357 source : AC5 18) chain B residue 288 type sequence S description BINDING SITE FOR RESIDUE EDO B 1357 source : AC5 19) chain B residue 289 type sequence T description BINDING SITE FOR RESIDUE EDO B 1357 source : AC5 20) chain A residue 170 type sequence G description BINDING SITE FOR RESIDUE EDO A 1357 source : AC6 21) chain A residue 175 type sequence Y description BINDING SITE FOR RESIDUE EDO A 1357 source : AC6 22) chain A residue 177 type sequence Y description BINDING SITE FOR RESIDUE EDO A 1357 source : AC6 23) chain A residue 190 type sequence E description BINDING SITE FOR RESIDUE EDO A 1357 source : AC6 24) chain A residue 288 type sequence S description BINDING SITE FOR RESIDUE EDO A 1357 source : AC6 25) chain A residue 290 type sequence N description BINDING SITE FOR RESIDUE EDO A 1357 source : AC6 26) chain B residue 235 type sequence E description BINDING SITE FOR RESIDUE EDO B 1358 source : AC7 27) chain B residue 236 type sequence A description BINDING SITE FOR RESIDUE EDO B 1358 source : AC7 28) chain B residue 237 type sequence F description BINDING SITE FOR RESIDUE EDO B 1358 source : AC7 29) chain B residue 238 type sequence L description BINDING SITE FOR RESIDUE EDO B 1358 source : AC7 30) chain B residue 316 type sequence S description BINDING SITE FOR RESIDUE EDO B 1359 source : AC8 31) chain B residue 317 type sequence M description BINDING SITE FOR RESIDUE EDO B 1359 source : AC8 32) chain B residue 318 type sequence D description BINDING SITE FOR RESIDUE EDO B 1359 source : AC8 33) chain A residue 154 type sequence R description BINDING SITE FOR RESIDUE EDO A 1358 source : AC9 34) chain A residue 155 type sequence T description BINDING SITE FOR RESIDUE EDO A 1358 source : AC9 35) chain A residue 157 type sequence L description BINDING SITE FOR RESIDUE EDO A 1358 source : AC9 36) chain A residue 158 type sequence D description BINDING SITE FOR RESIDUE EDO A 1358 source : AC9 37) chain A residue 289 type sequence T description BINDING SITE FOR RESIDUE EDO A 1358 source : AC9 38) chain A residue 290 type sequence N description BINDING SITE FOR RESIDUE EDO A 1358 source : AC9 39) chain A residue 291 type sequence F description BINDING SITE FOR RESIDUE EDO A 1358 source : AC9 40) chain A residue 314 type sequence K description BINDING SITE FOR RESIDUE EDO A 1359 source : BC1 41) chain A residue 316 type sequence S description BINDING SITE FOR RESIDUE EDO A 1359 source : BC1 42) chain A residue 317 type sequence M description BINDING SITE FOR RESIDUE EDO A 1359 source : BC1 43) chain A residue 332 type sequence W description BINDING SITE FOR RESIDUE EDO A 1359 source : BC1 44) chain A residue 224 type sequence K description BINDING SITE FOR RESIDUE EDO A 1360 source : BC2 45) chain A residue 235 type sequence E description BINDING SITE FOR RESIDUE EDO A 1360 source : BC2 46) chain A residue 236 type sequence A description BINDING SITE FOR RESIDUE EDO A 1360 source : BC2 47) chain A residue 237 type sequence F description BINDING SITE FOR RESIDUE EDO A 1360 source : BC2 48) chain A residue 238 type sequence L description BINDING SITE FOR RESIDUE EDO A 1360 source : BC2 49) chain A residue 77 type sequence G description BINDING SITE FOR RESIDUE EDO B 1360 source : BC3 50) chain A residue 126 type sequence T description BINDING SITE FOR RESIDUE EDO B 1360 source : BC3 51) chain B residue 77 type sequence G description BINDING SITE FOR RESIDUE EDO B 1360 source : BC3 52) chain B residue 126 type sequence T description BINDING SITE FOR RESIDUE EDO B 1360 source : BC3 53) chain A residue 83 type sequence T description BINDING SITE FOR RESIDUE EDO A 1361 source : BC4 54) chain A residue 230 type sequence S description BINDING SITE FOR RESIDUE EDO A 1361 source : BC4 55) chain A residue 243 type sequence T description BINDING SITE FOR RESIDUE EDO A 1361 source : BC4 56) chain B residue 150 type sequence I description BINDING SITE FOR RESIDUE EDO B 1361 source : BC5 57) chain B residue 151 type sequence G description BINDING SITE FOR RESIDUE EDO B 1361 source : BC5 58) chain B residue 152 type sequence R description BINDING SITE FOR RESIDUE EDO B 1361 source : BC5 59) chain B residue 153 type sequence L description BINDING SITE FOR RESIDUE EDO B 1361 source : BC5 60) chain B residue 290 type sequence N description BINDING SITE FOR RESIDUE EDO B 1361 source : BC5 61) chain A residue 217 type sequence K description BINDING SITE FOR RESIDUE EDO A 1362 source : BC6 62) chain A residue 302 type sequence Q description BINDING SITE FOR RESIDUE EDO A 1362 source : BC6 63) chain B residue 118 type sequence E description BINDING SITE FOR RESIDUE EDO B 1362 source : BC7 64) chain B residue 248 type sequence L description BINDING SITE FOR RESIDUE EDO B 1362 source : BC7 65) chain A residue 113 type sequence E description BINDING SITE FOR RESIDUE EDO B 1363 source : BC8 66) chain B residue 214 type sequence E description BINDING SITE FOR RESIDUE EDO B 1363 source : BC8 67) chain B residue 341 type sequence I description BINDING SITE FOR RESIDUE EDO B 1363 source : BC8 68) chain B residue 342 type sequence D description BINDING SITE FOR RESIDUE EDO B 1363 source : BC8 69) chain B residue 343 type sequence H description BINDING SITE FOR RESIDUE EDO B 1363 source : BC8 70) chain B residue 344 type sequence T description BINDING SITE FOR RESIDUE EDO B 1363 source : BC8 71) chain A residue 98 type sequence R description BINDING SITE FOR RESIDUE EDO A 1363 source : BC9 72) chain A residue 99 type sequence K description BINDING SITE FOR RESIDUE EDO A 1363 source : BC9 73) chain A residue 102 type sequence N description BINDING SITE FOR RESIDUE EDO A 1363 source : BC9 74) chain B residue 69 type sequence A description BINDING SITE FOR RESIDUE EDO B 1364 source : CC1 75) chain B residue 135 type sequence D description BINDING SITE FOR RESIDUE EDO B 1364 source : CC1 76) chain A residue 132 type sequence Y description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 77) chain A residue 135 type sequence D description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 78) chain A residue 177 type sequence Y description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 79) chain A residue 185 type sequence F description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 80) chain A residue 188 type sequence H description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 81) chain A residue 190 type sequence E description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 82) chain A residue 198 type sequence N description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 83) chain A residue 206 type sequence K description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 84) chain A residue 208 type sequence W description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 85) chain A residue 241 type sequence K description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 86) chain A residue 276 type sequence H description BINDING SITE FOR RESIDUE S2X A 1364 source : CC2 87) chain B residue 132 type sequence Y description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 88) chain B residue 185 type sequence F description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 89) chain B residue 188 type sequence H description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 90) chain B residue 190 type sequence E description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 91) chain B residue 198 type sequence N description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 92) chain B residue 206 type sequence K description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 93) chain B residue 208 type sequence W description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 94) chain B residue 241 type sequence K description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 95) chain B residue 276 type sequence H description BINDING SITE FOR RESIDUE S2X B 1365 source : CC3 96) chain A residue 105 type sequence K description BINDING SITE FOR RESIDUE DMS B 1366 source : CC4 97) chain B residue 228 type sequence P description BINDING SITE FOR RESIDUE DMS B 1366 source : CC4 98) chain B residue 229 type sequence G description BINDING SITE FOR RESIDUE DMS B 1366 source : CC4 99) chain B residue 230 type sequence S description BINDING SITE FOR RESIDUE DMS B 1366 source : CC4 100) chain A residue 226 type sequence F description BINDING SITE FOR RESIDUE DMS A 1365 source : CC5 101) chain A residue 227 type sequence F description BINDING SITE FOR RESIDUE DMS A 1365 source : CC5 102) chain A residue 228 type sequence P description BINDING SITE FOR RESIDUE DMS A 1365 source : CC5 103) chain A residue 229 type sequence G description BINDING SITE FOR RESIDUE DMS A 1365 source : CC5 104) chain A residue 230 type sequence S description BINDING SITE FOR RESIDUE DMS A 1365 source : CC5 105) chain B residue 190 type BINDING sequence E description BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI3 106) chain A residue 190 type BINDING sequence E description BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI3 107) chain A residue 306 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 108) chain A residue 308 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 109) chain B residue 234 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 110) chain B residue 240 type BINDING sequence H description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 111) chain B residue 306 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 112) chain B residue 308 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 113) chain A residue 240 type BINDING sequence H description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 114) chain A residue 234 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 115) chain B residue 241 type BINDING sequence K description BINDING => ECO:0000250|UniProtKB:B2RXH2 source Swiss-Prot : SWS_FT_FI5 116) chain A residue 241 type BINDING sequence K description BINDING => ECO:0000250|UniProtKB:B2RXH2 source Swiss-Prot : SWS_FT_FI5 117) chain B residue 198 type BINDING sequence N description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 118) chain B residue 206 type BINDING sequence K description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 119) chain A residue 206 type BINDING sequence K description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 120) chain B residue 132 type BINDING sequence Y description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 121) chain A residue 132 type BINDING sequence Y description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 122) chain A residue 198 type BINDING sequence N description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 123) chain B residue 188 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI2 124) chain B residue 276 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI2 125) chain A residue 276 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI2 126) chain A residue 188 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI2 127) chain A residue 170 type catalytic sequence G description 370 source MCSA : MCSA1 128) chain A residue 177 type catalytic sequence Y description 370 source MCSA : MCSA1 129) chain A residue 188 type catalytic sequence H description 370 source MCSA : MCSA1 130) chain A residue 190 type catalytic sequence E description 370 source MCSA : MCSA1 131) chain A residue 276 type catalytic sequence H description 370 source MCSA : MCSA1 132) chain A residue 288 type catalytic sequence S description 370 source MCSA : MCSA1 133) chain B residue 170 type catalytic sequence G description 370 source MCSA : MCSA2 134) chain B residue 177 type catalytic sequence Y description 370 source MCSA : MCSA2 135) chain B residue 188 type catalytic sequence H description 370 source MCSA : MCSA2 136) chain B residue 190 type catalytic sequence E description 370 source MCSA : MCSA2 137) chain B residue 276 type catalytic sequence H description 370 source MCSA : MCSA2 138) chain B residue 288 type catalytic sequence S description 370 source MCSA : MCSA2

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