eF-site ID 5a7o-AB PDB Code 5a7o Chain A, B click to enlarge Title Crystal structure of human JMJD2A in complex with compound 42 Classification OXIDOREDUCTASE Compound LYSINE-SPECIFIC DEMETHYLASE 4A Source Homo sapiens (Human) (KDM4A_HUMAN) Sequence A:  ESETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAG LAKVVPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFT QYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWK NLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKE SGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFG EPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMT LISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF NCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRK FQPERYKLWKAGKDNTVIDHTLPTPEAAEFE B:  LNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKV VPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFTQYNI QKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTF NPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGIT IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISP LMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE STNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPE RYKLWKAGKDNTVIDHTLPTPEAAEFE Description Functional site 1) chain A residue 227 type sequence F description BINDING SITE FOR RESIDUE SO4 A 1355 source : AC1 2) chain A residue 228 type sequence P description BINDING SITE FOR RESIDUE SO4 A 1355 source : AC1 3) chain A residue 229 type sequence G description BINDING SITE FOR RESIDUE SO4 A 1355 source : AC1 4) chain A residue 230 type sequence S description BINDING SITE FOR RESIDUE SO4 A 1355 source : AC1 5) chain B residue 105 type sequence K description BINDING SITE FOR RESIDUE SO4 A 1355 source : AC1 6) chain A residue 105 type sequence K description BINDING SITE FOR RESIDUE SO4 B 1355 source : AC2 7) chain B residue 227 type sequence F description BINDING SITE FOR RESIDUE SO4 B 1355 source : AC2 8) chain B residue 228 type sequence P description BINDING SITE FOR RESIDUE SO4 B 1355 source : AC2 9) chain B residue 229 type sequence G description BINDING SITE FOR RESIDUE SO4 B 1355 source : AC2 10) chain B residue 230 type sequence S description BINDING SITE FOR RESIDUE SO4 B 1355 source : AC2 11) chain A residue 132 type sequence Y description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 12) chain A residue 185 type sequence F description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 13) chain A residue 188 type sequence H description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 14) chain A residue 190 type sequence E description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 15) chain A residue 198 type sequence N description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 16) chain A residue 206 type sequence K description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 17) chain A residue 208 type sequence W description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 18) chain A residue 241 type sequence K description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 19) chain A residue 276 type sequence H description BINDING SITE FOR RESIDUE 7WH A 1356 source : AC3 20) chain B residue 132 type sequence Y description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 21) chain B residue 177 type sequence Y description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 22) chain B residue 185 type sequence F description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 23) chain B residue 188 type sequence H description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 24) chain B residue 190 type sequence E description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 25) chain B residue 206 type sequence K description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 26) chain B residue 208 type sequence W description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 27) chain B residue 241 type sequence K description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 28) chain B residue 276 type sequence H description BINDING SITE FOR RESIDUE 7WH B 1356 source : AC4 29) chain A residue 316 type sequence S description BINDING SITE FOR RESIDUE EDO A 1357 source : AC5 30) chain A residue 317 type sequence M description BINDING SITE FOR RESIDUE EDO A 1357 source : AC5 31) chain A residue 318 type sequence D description BINDING SITE FOR RESIDUE EDO A 1357 source : AC5 32) chain A residue 224 type sequence K description BINDING SITE FOR RESIDUE EDO A 1358 source : AC6 33) chain A residue 235 type sequence E description BINDING SITE FOR RESIDUE EDO A 1358 source : AC6 34) chain A residue 236 type sequence A description BINDING SITE FOR RESIDUE EDO A 1358 source : AC6 35) chain A residue 237 type sequence F description BINDING SITE FOR RESIDUE EDO A 1358 source : AC6 36) chain A residue 238 type sequence L description BINDING SITE FOR RESIDUE EDO A 1358 source : AC6 37) chain B residue 224 type sequence K description BINDING SITE FOR RESIDUE EDO B 1357 source : AC7 38) chain B residue 235 type sequence E description BINDING SITE FOR RESIDUE EDO B 1357 source : AC7 39) chain B residue 236 type sequence A description BINDING SITE FOR RESIDUE EDO B 1357 source : AC7 40) chain B residue 237 type sequence F description BINDING SITE FOR RESIDUE EDO B 1357 source : AC7 41) chain B residue 238 type sequence L description BINDING SITE FOR RESIDUE EDO B 1357 source : AC7 42) chain B residue 73 type sequence Q description BINDING SITE FOR RESIDUE EDO B 1358 source : AC8 43) chain B residue 74 type sequence L description BINDING SITE FOR RESIDUE EDO B 1358 source : AC8 44) chain B residue 75 type sequence V description BINDING SITE FOR RESIDUE EDO B 1358 source : AC8 45) chain B residue 125 type sequence L description BINDING SITE FOR RESIDUE EDO B 1358 source : AC8 46) chain B residue 126 type sequence T description BINDING SITE FOR RESIDUE EDO B 1358 source : AC8 47) chain B residue 127 type sequence F description BINDING SITE FOR RESIDUE EDO B 1358 source : AC8 48) chain B residue 129 type sequence P description BINDING SITE FOR RESIDUE EDO B 1358 source : AC8 49) chain B residue 130 type sequence P description BINDING SITE FOR RESIDUE EDO B 1358 source : AC8 50) chain A residue 98 type sequence R description BINDING SITE FOR RESIDUE EDO A 1359 source : AC9 51) chain A residue 81 type sequence L description BINDING SITE FOR RESIDUE EDO A 1360 source : BC1 52) chain A residue 82 type sequence F description BINDING SITE FOR RESIDUE EDO A 1360 source : BC1 53) chain A residue 83 type sequence T description BINDING SITE FOR RESIDUE EDO A 1360 source : BC1 54) chain A residue 227 type sequence F description BINDING SITE FOR RESIDUE EDO A 1360 source : BC1 55) chain A residue 217 type sequence K description BINDING SITE FOR RESIDUE EDO A 1361 source : BC2 56) chain A residue 273 type sequence Y description BINDING SITE FOR RESIDUE EDO A 1361 source : BC2 57) chain A residue 302 type sequence Q description BINDING SITE FOR RESIDUE EDO A 1361 source : BC2 58) chain A residue 304 type sequence V description BINDING SITE FOR RESIDUE EDO A 1361 source : BC2 59) chain A residue 78 type sequence Q description BINDING SITE FOR RESIDUE EDO A 1362 source : BC3 60) chain A residue 79 type sequence S description BINDING SITE FOR RESIDUE EDO A 1362 source : BC3 61) chain A residue 122 type sequence W description BINDING SITE FOR RESIDUE EDO A 1362 source : BC3 62) chain A residue 123 type sequence K description BINDING SITE FOR RESIDUE EDO A 1362 source : BC3 63) chain B residue 25 type sequence R description BINDING SITE FOR RESIDUE EDO B 1359 source : BC4 64) chain B residue 27 type sequence F description BINDING SITE FOR RESIDUE EDO B 1359 source : BC4 65) chain B residue 146 type sequence D description BINDING SITE FOR RESIDUE EDO B 1359 source : BC4 66) chain B residue 148 type sequence W description BINDING SITE FOR RESIDUE EDO B 1359 source : BC4 67) chain B residue 149 type sequence N description BINDING SITE FOR RESIDUE EDO B 1359 source : BC4 68) chain A residue 138 type sequence G description BINDING SITE FOR RESIDUE EDO A 1363 source : BC5 69) chain A residue 139 type sequence T description BINDING SITE FOR RESIDUE EDO A 1363 source : BC5 70) chain A residue 23 type sequence E description BINDING SITE FOR RESIDUE EDO A 1364 source : BC6 71) chain A residue 29 type sequence R description BINDING SITE FOR RESIDUE EDO A 1364 source : BC6 72) chain B residue 217 type sequence K description BINDING SITE FOR RESIDUE EDO B 1360 source : BC7 73) chain B residue 302 type sequence Q description BINDING SITE FOR RESIDUE EDO B 1360 source : BC7 74) chain A residue 312 type sequence M description BINDING SITE FOR RESIDUE EDO A 1365 source : BC8 75) chain A residue 313 type sequence V description BINDING SITE FOR RESIDUE EDO A 1365 source : BC8 76) chain A residue 314 type sequence K description BINDING SITE FOR RESIDUE EDO A 1365 source : BC8 77) chain A residue 89 type sequence K description BINDING SITE FOR RESIDUE EDO A 1366 source : BC9 78) chain A residue 90 type sequence K description BINDING SITE FOR RESIDUE EDO A 1366 source : BC9 79) chain A residue 188 type sequence H description BINDING SITE FOR RESIDUE EDO A 1367 source : CC1 80) chain A residue 189 type sequence T description BINDING SITE FOR RESIDUE EDO A 1367 source : CC1 81) chain A residue 238 type sequence L description BINDING SITE FOR RESIDUE EDO A 1367 source : CC1 82) chain A residue 239 type sequence R description BINDING SITE FOR RESIDUE EDO A 1367 source : CC1 83) chain A residue 275 type sequence Y description BINDING SITE FOR RESIDUE EDO A 1367 source : CC1 84) chain B residue 98 type sequence R description BINDING SITE FOR RESIDUE EDO B 1361 source : CC2 85) chain A residue 234 type sequence C description BINDING SITE FOR RESIDUE ZN A 1368 source : CC3 86) chain A residue 240 type sequence H description BINDING SITE FOR RESIDUE ZN A 1368 source : CC3 87) chain A residue 306 type sequence C description BINDING SITE FOR RESIDUE ZN A 1368 source : CC3 88) chain A residue 308 type sequence C description BINDING SITE FOR RESIDUE ZN A 1368 source : CC3 89) chain B residue 234 type sequence C description BINDING SITE FOR RESIDUE ZN B 1362 source : CC4 90) chain B residue 240 type sequence H description BINDING SITE FOR RESIDUE ZN B 1362 source : CC4 91) chain B residue 306 type sequence C description BINDING SITE FOR RESIDUE ZN B 1362 source : CC4 92) chain B residue 308 type sequence C description BINDING SITE FOR RESIDUE ZN B 1362 source : CC4 93) chain A residue 188 type sequence H description BINDING SITE FOR RESIDUE MN A 1369 source : CC5 94) chain A residue 190 type sequence E description BINDING SITE FOR RESIDUE MN A 1369 source : CC5 95) chain A residue 276 type sequence H description BINDING SITE FOR RESIDUE MN A 1369 source : CC5 96) chain B residue 188 type sequence H description BINDING SITE FOR RESIDUE MN B 1363 source : CC6 97) chain B residue 190 type sequence E description BINDING SITE FOR RESIDUE MN B 1363 source : CC6 98) chain B residue 276 type sequence H description BINDING SITE FOR RESIDUE MN B 1363 source : CC6 99) chain A residue 170 type sequence G description BINDING SITE FOR RESIDUE DMS A 1370 source : CC7 100) chain A residue 177 type sequence Y description BINDING SITE FOR RESIDUE DMS A 1370 source : CC7 101) chain A residue 190 type sequence E description BINDING SITE FOR RESIDUE DMS A 1370 source : CC7 102) chain A residue 288 type sequence S description BINDING SITE FOR RESIDUE DMS A 1370 source : CC7 103) chain B residue 170 type sequence G description BINDING SITE FOR RESIDUE DMS B 1364 source : CC8 104) chain B residue 175 type sequence Y description BINDING SITE FOR RESIDUE DMS B 1364 source : CC8 105) chain B residue 177 type sequence Y description BINDING SITE FOR RESIDUE DMS B 1364 source : CC8 106) chain B residue 190 type sequence E description BINDING SITE FOR RESIDUE DMS B 1364 source : CC8 107) chain B residue 288 type sequence S description BINDING SITE FOR RESIDUE DMS B 1364 source : CC8 108) chain B residue 290 type sequence N description BINDING SITE FOR RESIDUE DMS B 1364 source : CC8 109) chain B residue 198 type BINDING sequence N description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 110) chain B residue 206 type BINDING sequence K description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 111) chain A residue 132 type BINDING sequence Y description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 112) chain A residue 198 type BINDING sequence N description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 113) chain A residue 206 type BINDING sequence K description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 114) chain B residue 132 type BINDING sequence Y description BINDING => ECO:0000269|PubMed:16677698 source Swiss-Prot : SWS_FT_FI1 115) chain B residue 188 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI2 116) chain B residue 276 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI2 117) chain A residue 188 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI2 118) chain A residue 276 type BINDING sequence H description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI2 119) chain A residue 190 type BINDING sequence E description BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI3 120) chain B residue 190 type BINDING sequence E description BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168 source Swiss-Prot : SWS_FT_FI3 121) chain A residue 306 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 122) chain A residue 308 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 123) chain B residue 234 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 124) chain B residue 240 type BINDING sequence H description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 125) chain B residue 306 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 126) chain B residue 308 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 127) chain A residue 234 type BINDING sequence C description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 128) chain A residue 240 type BINDING sequence H description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I source Swiss-Prot : SWS_FT_FI4 129) chain A residue 241 type BINDING sequence K description BINDING => ECO:0000250|UniProtKB:B2RXH2 source Swiss-Prot : SWS_FT_FI5 130) chain B residue 241 type BINDING sequence K description BINDING => ECO:0000250|UniProtKB:B2RXH2 source Swiss-Prot : SWS_FT_FI5 131) chain A residue 170 type catalytic sequence G description 370 source MCSA : MCSA1 132) chain A residue 177 type catalytic sequence Y description 370 source MCSA : MCSA1 133) chain A residue 188 type catalytic sequence H description 370 source MCSA : MCSA1 134) chain A residue 190 type catalytic sequence E description 370 source MCSA : MCSA1 135) chain A residue 276 type catalytic sequence H description 370 source MCSA : MCSA1 136) chain A residue 288 type catalytic sequence S description 370 source MCSA : MCSA1 137) chain B residue 170 type catalytic sequence G description 370 source MCSA : MCSA2 138) chain B residue 177 type catalytic sequence Y description 370 source MCSA : MCSA2 139) chain B residue 188 type catalytic sequence H description 370 source MCSA : MCSA2 140) chain B residue 190 type catalytic sequence E description 370 source MCSA : MCSA2 141) chain B residue 276 type catalytic sequence H description 370 source MCSA : MCSA2 142) chain B residue 288 type catalytic sequence S description 370 source MCSA : MCSA2

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