eF-site ID 5a7o-A
PDB Code 5a7o
Chain A

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Title Crystal structure of human JMJD2A in complex with compound 42
Classification OXIDOREDUCTASE
Compound LYSINE-SPECIFIC DEMETHYLASE 4A
Source Homo sapiens (Human) (KDM4A_HUMAN)
Sequence A:  ESETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAG
LAKVVPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFT
QYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWK
NLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKE
SGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFG
EPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMT
LISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF
NCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRK
FQPERYKLWKAGKDNTVIDHTLPTPEAAEFE
Description


Functional site

1) chain A
residue 227
type
sequence F
description BINDING SITE FOR RESIDUE SO4 A 1355
source : AC1

2) chain A
residue 228
type
sequence P
description BINDING SITE FOR RESIDUE SO4 A 1355
source : AC1

3) chain A
residue 229
type
sequence G
description BINDING SITE FOR RESIDUE SO4 A 1355
source : AC1

4) chain A
residue 230
type
sequence S
description BINDING SITE FOR RESIDUE SO4 A 1355
source : AC1

5) chain A
residue 105
type
sequence K
description BINDING SITE FOR RESIDUE SO4 B 1355
source : AC2

6) chain A
residue 132
type
sequence Y
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

7) chain A
residue 185
type
sequence F
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

8) chain A
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

9) chain A
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

10) chain A
residue 198
type
sequence N
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

11) chain A
residue 206
type
sequence K
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

12) chain A
residue 208
type
sequence W
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

13) chain A
residue 241
type
sequence K
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

14) chain A
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE 7WH A 1356
source : AC3

15) chain A
residue 316
type
sequence S
description BINDING SITE FOR RESIDUE EDO A 1357
source : AC5

16) chain A
residue 317
type
sequence M
description BINDING SITE FOR RESIDUE EDO A 1357
source : AC5

17) chain A
residue 318
type
sequence D
description BINDING SITE FOR RESIDUE EDO A 1357
source : AC5

18) chain A
residue 224
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

19) chain A
residue 235
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

20) chain A
residue 236
type
sequence A
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

21) chain A
residue 237
type
sequence F
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

22) chain A
residue 238
type
sequence L
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

23) chain A
residue 98
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 1359
source : AC9

24) chain A
residue 81
type
sequence L
description BINDING SITE FOR RESIDUE EDO A 1360
source : BC1

25) chain A
residue 82
type
sequence F
description BINDING SITE FOR RESIDUE EDO A 1360
source : BC1

26) chain A
residue 83
type
sequence T
description BINDING SITE FOR RESIDUE EDO A 1360
source : BC1

27) chain A
residue 227
type
sequence F
description BINDING SITE FOR RESIDUE EDO A 1360
source : BC1

28) chain A
residue 217
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1361
source : BC2

29) chain A
residue 273
type
sequence Y
description BINDING SITE FOR RESIDUE EDO A 1361
source : BC2

30) chain A
residue 302
type
sequence Q
description BINDING SITE FOR RESIDUE EDO A 1361
source : BC2

31) chain A
residue 304
type
sequence V
description BINDING SITE FOR RESIDUE EDO A 1361
source : BC2

32) chain A
residue 78
type
sequence Q
description BINDING SITE FOR RESIDUE EDO A 1362
source : BC3

33) chain A
residue 79
type
sequence S
description BINDING SITE FOR RESIDUE EDO A 1362
source : BC3

34) chain A
residue 122
type
sequence W
description BINDING SITE FOR RESIDUE EDO A 1362
source : BC3

35) chain A
residue 123
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1362
source : BC3

36) chain A
residue 138
type
sequence G
description BINDING SITE FOR RESIDUE EDO A 1363
source : BC5

37) chain A
residue 139
type
sequence T
description BINDING SITE FOR RESIDUE EDO A 1363
source : BC5

38) chain A
residue 23
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 1364
source : BC6

39) chain A
residue 29
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 1364
source : BC6

40) chain A
residue 312
type
sequence M
description BINDING SITE FOR RESIDUE EDO A 1365
source : BC8

41) chain A
residue 313
type
sequence V
description BINDING SITE FOR RESIDUE EDO A 1365
source : BC8

42) chain A
residue 314
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1365
source : BC8

43) chain A
residue 89
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1366
source : BC9

44) chain A
residue 90
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1366
source : BC9

45) chain A
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE EDO A 1367
source : CC1

46) chain A
residue 189
type
sequence T
description BINDING SITE FOR RESIDUE EDO A 1367
source : CC1

47) chain A
residue 238
type
sequence L
description BINDING SITE FOR RESIDUE EDO A 1367
source : CC1

48) chain A
residue 239
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 1367
source : CC1

49) chain A
residue 275
type
sequence Y
description BINDING SITE FOR RESIDUE EDO A 1367
source : CC1

50) chain A
residue 234
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1368
source : CC3

51) chain A
residue 240
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 1368
source : CC3

52) chain A
residue 306
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1368
source : CC3

53) chain A
residue 308
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 1368
source : CC3

54) chain A
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE MN A 1369
source : CC5

55) chain A
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE MN A 1369
source : CC5

56) chain A
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE MN A 1369
source : CC5

57) chain A
residue 170
type
sequence G
description BINDING SITE FOR RESIDUE DMS A 1370
source : CC7

58) chain A
residue 177
type
sequence Y
description BINDING SITE FOR RESIDUE DMS A 1370
source : CC7

59) chain A
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE DMS A 1370
source : CC7

60) chain A
residue 288
type
sequence S
description BINDING SITE FOR RESIDUE DMS A 1370
source : CC7

61) chain A
residue 132
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

62) chain A
residue 198
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

63) chain A
residue 206
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

64) chain A
residue 188
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI2

65) chain A
residue 276
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI2

66) chain A
residue 190
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI3

67) chain A
residue 306
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

68) chain A
residue 308
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

69) chain A
residue 234
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

70) chain A
residue 240
type BINDING
sequence H
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

71) chain A
residue 241
type BINDING
sequence K
description BINDING => ECO:0000250|UniProtKB:B2RXH2
source Swiss-Prot : SWS_FT_FI5

72) chain A
residue 170
type catalytic
sequence G
description 370
source MCSA : MCSA1

73) chain A
residue 177
type catalytic
sequence Y
description 370
source MCSA : MCSA1

74) chain A
residue 188
type catalytic
sequence H
description 370
source MCSA : MCSA1

75) chain A
residue 190
type catalytic
sequence E
description 370
source MCSA : MCSA1

76) chain A
residue 276
type catalytic
sequence H
description 370
source MCSA : MCSA1

77) chain A
residue 288
type catalytic
sequence S
description 370
source MCSA : MCSA1


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