eF-site ID 5a7n-AB
PDB Code 5a7n
Chain A, B

click to enlarge
Title Crystal structure of human JMJD2A in complex with compound 43
Classification OXIDOREDUCTASE
Compound LYSINE-SPECIFIC DEMETHYLASE 4A
Source Homo sapiens (Human) (KDM4A_HUMAN)
Sequence A:  ESETLNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAG
LAKVVPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFT
QYNIQKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWK
NLTFNPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKE
SGITIEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFG
EPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMT
LISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGF
NCAESTNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRK
FQPERYKLWKAGKDNTVIDHTLPTPEAAEFL
B:  LNPSARIMTFYPTMEEFRNFSRYIAYIESQGAHRAGLAKV
VPPKEWKPRASYDDIDDLVIPAPIQQLVTGQSGLFTQYNI
QKKAMTVREFRKIANSDKYCTPRYSEFEELERKYWKNLTF
NPPIYGADVNGTLYEKHVDEWNIGRLRTILDLVEKESGIT
IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKS
WYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISP
LMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE
STNFATRRWIEYGKQAVLCSCRKDMVKISMDVFVRKFQPE
RYKLWKAGKDNTVIDHTLPTPEAAEF
Description


Functional site

1) chain A
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE MN A 501
source : AC1

2) chain A
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE MN A 501
source : AC1

3) chain A
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE MN A 501
source : AC1

4) chain A
residue 234
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 502
source : AC2

5) chain A
residue 240
type
sequence H
description BINDING SITE FOR RESIDUE ZN A 502
source : AC2

6) chain A
residue 306
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 502
source : AC2

7) chain A
residue 308
type
sequence C
description BINDING SITE FOR RESIDUE ZN A 502
source : AC2

8) chain A
residue 89
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1355
source : AC3

9) chain A
residue 90
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1355
source : AC3

10) chain A
residue 315
type
sequence I
description BINDING SITE FOR RESIDUE EDO A 1356
source : AC4

11) chain A
residue 316
type
sequence S
description BINDING SITE FOR RESIDUE EDO A 1356
source : AC4

12) chain A
residue 317
type
sequence M
description BINDING SITE FOR RESIDUE EDO A 1356
source : AC4

13) chain A
residue 332
type
sequence W
description BINDING SITE FOR RESIDUE EDO A 1356
source : AC4

14) chain A
residue 170
type
sequence G
description BINDING SITE FOR RESIDUE EDO A 1357
source : AC5

15) chain A
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 1357
source : AC5

16) chain A
residue 288
type
sequence S
description BINDING SITE FOR RESIDUE EDO A 1357
source : AC5

17) chain A
residue 224
type
sequence K
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

18) chain A
residue 235
type
sequence E
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

19) chain A
residue 236
type
sequence A
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

20) chain A
residue 237
type
sequence F
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

21) chain A
residue 238
type
sequence L
description BINDING SITE FOR RESIDUE EDO A 1358
source : AC6

22) chain A
residue 294
type
sequence R
description BINDING SITE FOR RESIDUE EDO A 1359
source : AC7

23) chain A
residue 324
type
sequence F
description BINDING SITE FOR RESIDUE EDO A 1359
source : AC7

24) chain A
residue 325
type
sequence Q
description BINDING SITE FOR RESIDUE EDO A 1359
source : AC7

25) chain A
residue 227
type
sequence F
description BINDING SITE FOR RESIDUE SO4 A 1360
source : AC8

26) chain A
residue 228
type
sequence P
description BINDING SITE FOR RESIDUE SO4 A 1360
source : AC8

27) chain A
residue 229
type
sequence G
description BINDING SITE FOR RESIDUE SO4 A 1360
source : AC8

28) chain A
residue 230
type
sequence S
description BINDING SITE FOR RESIDUE SO4 A 1360
source : AC8

29) chain B
residue 105
type
sequence K
description BINDING SITE FOR RESIDUE SO4 A 1360
source : AC8

30) chain A
residue 132
type
sequence Y
description BINDING SITE FOR RESIDUE VAO A 4000
source : AC9

31) chain A
residue 185
type
sequence F
description BINDING SITE FOR RESIDUE VAO A 4000
source : AC9

32) chain A
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE VAO A 4000
source : AC9

33) chain A
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE VAO A 4000
source : AC9

34) chain A
residue 206
type
sequence K
description BINDING SITE FOR RESIDUE VAO A 4000
source : AC9

35) chain A
residue 208
type
sequence W
description BINDING SITE FOR RESIDUE VAO A 4000
source : AC9

36) chain A
residue 241
type
sequence K
description BINDING SITE FOR RESIDUE VAO A 4000
source : AC9

37) chain A
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE VAO A 4000
source : AC9

38) chain B
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE MN B 501
source : BC1

39) chain B
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE MN B 501
source : BC1

40) chain B
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE MN B 501
source : BC1

41) chain B
residue 234
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 502
source : BC2

42) chain B
residue 240
type
sequence H
description BINDING SITE FOR RESIDUE ZN B 502
source : BC2

43) chain B
residue 306
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 502
source : BC2

44) chain B
residue 308
type
sequence C
description BINDING SITE FOR RESIDUE ZN B 502
source : BC2

45) chain B
residue 170
type
sequence G
description BINDING SITE FOR RESIDUE EDO B 1354
source : BC3

46) chain B
residue 177
type
sequence Y
description BINDING SITE FOR RESIDUE EDO B 1354
source : BC3

47) chain B
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE EDO B 1354
source : BC3

48) chain B
residue 288
type
sequence S
description BINDING SITE FOR RESIDUE EDO B 1354
source : BC3

49) chain B
residue 290
type
sequence N
description BINDING SITE FOR RESIDUE EDO B 1354
source : BC3

50) chain B
residue 109
type
sequence P
description BINDING SITE FOR RESIDUE EDO B 1355
source : BC4

51) chain B
residue 124
type
sequence N
description BINDING SITE FOR RESIDUE EDO B 1355
source : BC4

52) chain B
residue 128
type
sequence N
description BINDING SITE FOR RESIDUE EDO B 1355
source : BC4

53) chain B
residue 181
type
sequence W
description BINDING SITE FOR RESIDUE EDO B 1355
source : BC4

54) chain B
residue 182
type
sequence K
description BINDING SITE FOR RESIDUE EDO B 1355
source : BC4

55) chain A
residue 105
type
sequence K
description BINDING SITE FOR RESIDUE SO4 B 1356
source : BC5

56) chain B
residue 227
type
sequence F
description BINDING SITE FOR RESIDUE SO4 B 1356
source : BC5

57) chain B
residue 228
type
sequence P
description BINDING SITE FOR RESIDUE SO4 B 1356
source : BC5

58) chain B
residue 229
type
sequence G
description BINDING SITE FOR RESIDUE SO4 B 1356
source : BC5

59) chain B
residue 230
type
sequence S
description BINDING SITE FOR RESIDUE SO4 B 1356
source : BC5

60) chain B
residue 132
type
sequence Y
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

61) chain B
residue 185
type
sequence F
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

62) chain B
residue 188
type
sequence H
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

63) chain B
residue 190
type
sequence E
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

64) chain B
residue 198
type
sequence N
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

65) chain B
residue 206
type
sequence K
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

66) chain B
residue 208
type
sequence W
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

67) chain B
residue 241
type
sequence K
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

68) chain B
residue 276
type
sequence H
description BINDING SITE FOR RESIDUE VAO B 4001
source : BC6

69) chain A
residue 170
type catalytic
sequence G
description 370
source MCSA : MCSA1

70) chain A
residue 177
type catalytic
sequence Y
description 370
source MCSA : MCSA1

71) chain A
residue 188
type catalytic
sequence H
description 370
source MCSA : MCSA1

72) chain A
residue 190
type catalytic
sequence E
description 370
source MCSA : MCSA1

73) chain A
residue 276
type catalytic
sequence H
description 370
source MCSA : MCSA1

74) chain A
residue 288
type catalytic
sequence S
description 370
source MCSA : MCSA1

75) chain B
residue 170
type catalytic
sequence G
description 370
source MCSA : MCSA2

76) chain B
residue 177
type catalytic
sequence Y
description 370
source MCSA : MCSA2

77) chain B
residue 188
type catalytic
sequence H
description 370
source MCSA : MCSA2

78) chain B
residue 190
type catalytic
sequence E
description 370
source MCSA : MCSA2

79) chain B
residue 276
type catalytic
sequence H
description 370
source MCSA : MCSA2

80) chain B
residue 288
type catalytic
sequence S
description 370
source MCSA : MCSA2

81) chain A
residue 132
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

82) chain A
residue 198
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

83) chain A
residue 206
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

84) chain B
residue 132
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

85) chain B
residue 198
type BINDING
sequence N
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

86) chain B
residue 206
type BINDING
sequence K
description BINDING => ECO:0000269|PubMed:16677698
source Swiss-Prot : SWS_FT_FI1

87) chain A
residue 188
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI2

88) chain A
residue 276
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI2

89) chain B
residue 188
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI2

90) chain B
residue 276
type BINDING
sequence H
description BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI2

91) chain A
residue 190
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI3

92) chain B
residue 190
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
source Swiss-Prot : SWS_FT_FI3

93) chain A
residue 241
type BINDING
sequence K
description BINDING => ECO:0000250|UniProtKB:B2RXH2
source Swiss-Prot : SWS_FT_FI5

94) chain B
residue 241
type BINDING
sequence K
description BINDING => ECO:0000250|UniProtKB:B2RXH2
source Swiss-Prot : SWS_FT_FI5

95) chain A
residue 234
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

96) chain A
residue 240
type BINDING
sequence H
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

97) chain A
residue 306
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

98) chain A
residue 308
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

99) chain B
residue 234
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

100) chain B
residue 240
type BINDING
sequence H
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

101) chain B
residue 306
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4

102) chain B
residue 308
type BINDING
sequence C
description BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
source Swiss-Prot : SWS_FT_FI4


Display surface

Download
Links