eF-site ID 5a19-A
PDB Code 5a19
Chain A

click to enlarge
Title The structure of MAT2A in complex with PPNP.
Classification TRANSFERASE
Compound S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2
Source Homo sapiens (Human) (METK2_HUMAN)
Sequence A:  GTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVA
CETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDS
SKGFDYKTCNVLVALEQQSPEEDIGAGDQGLMFGYATDET
EECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTV
QYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKV
IKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKI
IVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLV
KGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELL
EIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFP
WEVPKKLKY
Description


Functional site

1) chain A
residue 78
type
sequence D
description BINDING SITE FOR RESIDUE PEG A 400
source : AC1

2) chain A
residue 112
type
sequence Q
description BINDING SITE FOR RESIDUE PEG A 400
source : AC1

3) chain A
residue 114
type
sequence S
description BINDING SITE FOR RESIDUE PEG A 400
source : AC1

4) chain A
residue 326
type
sequence H
description BINDING SITE FOR RESIDUE PEG A 401
source : AC2

5) chain A
residue 327
type
sequence P
description BINDING SITE FOR RESIDUE PEG A 401
source : AC2

6) chain A
residue 328
type
sequence L
description BINDING SITE FOR RESIDUE PEG A 401
source : AC2

7) chain A
residue 158
type
sequence H
description BINDING SITE FOR RESIDUE PEG A 402
source : AC3

8) chain A
residue 23
type
sequence E
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

9) chain A
residue 29
type
sequence H
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

10) chain A
residue 31
type
sequence D
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

11) chain A
residue 134
type
sequence D
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

12) chain A
residue 181
type
sequence K
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

13) chain A
residue 258
type
sequence D
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

14) chain A
residue 264
type
sequence R
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

15) chain A
residue 265
type
sequence K
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

16) chain A
residue 280
type
sequence G
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

17) chain A
residue 281
type
sequence A
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

18) chain A
residue 285
type
sequence K
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

19) chain A
residue 291
type
sequence D
description BINDING SITE FOR RESIDUE PPK A 403
source : AC4

20) chain A
residue 36
type
sequence Q
description BINDING SITE FOR RESIDUE PG4 A 407
source : AC5

21) chain A
residue 89
type
sequence H
description BINDING SITE FOR RESIDUE PG4 A 407
source : AC5

22) chain A
residue 238
type
sequence E
description BINDING SITE FOR RESIDUE PG4 A 407
source : AC5

23) chain A
residue 372
type
sequence Q
description BINDING SITE FOR RESIDUE PG4 A 407
source : AC5

24) chain A
residue 373
type
sequence R
description BINDING SITE FOR RESIDUE PG4 A 407
source : AC5

25) chain A
residue 377
type
sequence Y
description BINDING SITE FOR RESIDUE PG4 A 407
source : AC5

26) chain A
residue 190
type
sequence Q
description BINDING SITE FOR RESIDUE PEG A 408
source : AC6

27) chain A
residue 313
type
sequence R
description BINDING SITE FOR RESIDUE PEG A 408
source : AC6

28) chain A
residue 333
type
sequence F
description BINDING SITE FOR RESIDUE PEG A 408
source : AC6

29) chain A
residue 31
type
sequence D
description BINDING SITE FOR RESIDUE MG A 409
source : AC7

30) chain A
residue 57
type
sequence E
description BINDING SITE FOR RESIDUE K A 410
source : AC8

31) chain A
residue 258
type
sequence D
description BINDING SITE FOR RESIDUE K A 410
source : AC8

32) chain A
residue 259
type
sequence A
description BINDING SITE FOR RESIDUE K A 410
source : AC8

33) chain A
residue 29
type catalytic
sequence H
description 9
source MCSA : MCSA1

34) chain A
residue 264
type catalytic
sequence R
description 9
source MCSA : MCSA1

35) chain A
residue 265
type catalytic
sequence K
description 9
source MCSA : MCSA1

36) chain A
residue 285
type catalytic
sequence K
description 9
source MCSA : MCSA1

37) chain A
residue 289
type catalytic
sequence K
description 9
source MCSA : MCSA1

38) chain A
residue 291
type catalytic
sequence D
description 9
source MCSA : MCSA1

39) chain A
residue 31
type catalytic
sequence D
description 9
source MCSA : MCSA1

40) chain A
residue 32
type catalytic
sequence K
description 9
source MCSA : MCSA1

41) chain A
residue 57
type catalytic
sequence E
description 9
source MCSA : MCSA1

42) chain A
residue 70
type catalytic
sequence E
description 9
source MCSA : MCSA1

43) chain A
residue 181
type catalytic
sequence K
description 9
source MCSA : MCSA1

44) chain A
residue 250
type catalytic
sequence F
description 9
source MCSA : MCSA1

45) chain A
residue 258
type catalytic
sequence D
description 9
source MCSA : MCSA1

46) chain A
residue 259
type catalytic
sequence A
description 9
source MCSA : MCSA1

47) chain A
residue 81
type MOD_RES
sequence K
description N6-acetyllysine => ECO:0007744|PubMed:19608861
source Swiss-Prot : SWS_FT_FI12

48) chain A
residue 57
type BINDING
sequence E
description BINDING => ECO:0000250|UniProtKB:P0A817
source Swiss-Prot : SWS_FT_FI3

49) chain A
residue 131-141
type prosite
sequence GAGDQGLMFGY
description ADOMET_SYNTHASE_1 S-adenosylmethionine synthase signature 1. GAGDQGlmfGY
source prosite : PS00376

50) chain A
residue 278-286
type prosite
sequence GGGAFSGKD
description ADOMET_SYNTHASE_2 S-adenosylmethionine synthase signature 2. GGGAFSgKD
source prosite : PS00377

51) chain A
residue 29
type BINDING
sequence H
description in other chain => ECO:0000305|PubMed:25075345, ECO:0000305|PubMed:26858410, ECO:0007744|PDB:4NDN, ECO:0007744|PDB:5A19
source Swiss-Prot : SWS_FT_FI1

52) chain A
residue 264
type BINDING
sequence R
description in other chain => ECO:0000305|PubMed:25075345, ECO:0000305|PubMed:26858410, ECO:0007744|PDB:4NDN, ECO:0007744|PDB:5A19
source Swiss-Prot : SWS_FT_FI1

53) chain A
residue 285
type BINDING
sequence K
description BINDING => ECO:0000305|PubMed:25075345, ECO:0000305|PubMed:26858410, ECO:0007744|PDB:4NDN
source Swiss-Prot : SWS_FT_FI10

54) chain A
residue 291
type BINDING
sequence D
description BINDING => ECO:0000305|PubMed:25075345, ECO:0000305|PubMed:26858410, ECO:0007744|PDB:4NDN
source Swiss-Prot : SWS_FT_FI10

55) chain A
residue 289
type BINDING
sequence K
description in other chain => ECO:0000250|UniProtKB:P0A817
source Swiss-Prot : SWS_FT_FI11

56) chain A
residue 114
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:18669648
source Swiss-Prot : SWS_FT_FI13

57) chain A
residue 384
type MOD_RES
sequence S
description Phosphoserine => ECO:0007744|PubMed:23186163
source Swiss-Prot : SWS_FT_FI14

58) chain A
residue 228
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI15

59) chain A
residue 234
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
source Swiss-Prot : SWS_FT_FI15

60) chain A
residue 31
type BINDING
sequence D
description BINDING => ECO:0000305|PubMed:25075345, ECO:0000305|PubMed:26858410, ECO:0007744|PDB:4KTT, ECO:0007744|PDB:4NDN, ECO:0007744|PDB:5A19, ECO:0007744|PDB:5A1G, ECO:0007744|PDB:5A1I
source Swiss-Prot : SWS_FT_FI2

61) chain A
residue 70
type BINDING
sequence E
description in other chain => ECO:0000305|PubMed:25075345, ECO:0007744|PDB:4NDN
source Swiss-Prot : SWS_FT_FI4

62) chain A
residue 113
type BINDING
sequence Q
description in other chain => ECO:0000305|PubMed:25075345
source Swiss-Prot : SWS_FT_FI5

63) chain A
residue 179
type BINDING
sequence D
description in other chain => ECO:0000305|PubMed:25075345, ECO:0000305|PubMed:26858410, ECO:0007744|PDB:4KTT, ECO:0007744|PDB:4NDN, ECO:0007744|PDB:5A19, ECO:0007744|PDB:5A1G, ECO:0007744|PDB:5A1I
source Swiss-Prot : SWS_FT_FI6

64) chain A
residue 247
type BINDING
sequence S
description in other chain => ECO:0000305|PubMed:25075345, ECO:0000305|PubMed:26858410, ECO:0007744|PDB:4KTT, ECO:0007744|PDB:4NDN, ECO:0007744|PDB:5A1G, ECO:0007744|PDB:5A1I
source Swiss-Prot : SWS_FT_FI7

65) chain A
residue 258
type BINDING
sequence D
description BINDING => ECO:0000305|PubMed:25075345, ECO:0000305|PubMed:26858410, ECO:0007744|PDB:4NDN, ECO:0007744|PDB:5A1I
source Swiss-Prot : SWS_FT_FI8

66) chain A
residue 281
type BINDING
sequence A
description BINDING => ECO:0000305|PubMed:25075345, ECO:0007744|PDB:4NDN
source Swiss-Prot : SWS_FT_FI9


Display surface

Download
Links