|
eF-site ID
|
4zux-h |
PDB Code
|
4zux |
Chain
|
h |
|
click to enlarge
|
|
Title
|
SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome |
Classification
|
Hydrolase/DNA |
Compound
|
Histone H3.2 |
Source
|
Xenopus laevis (African clawed frog) (SGF73_YEAST) |
|
Sequence
|
h: |
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
|
|
Description
|
(1) |
Histone H3.2, Histone H4, Histone H2A type 1, Histone H2B 1.1, Ubiquitin carboxyl-terminal hydrolase 8, Transcription and mRNA export factor SUS1, SAGA-associated factor 11, Polyubiquitin-B, SAGA-associated factor 73/DNA Complex
|
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Functional site
|
|
1)
|
chain |
h |
residue |
54 |
type |
SITE |
sequence |
R
|
description |
Interacts with activating enzyme
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
2)
|
chain |
h |
residue |
72 |
type |
SITE |
sequence |
R
|
description |
Interacts with activating enzyme
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
3)
|
chain |
h |
residue |
29 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127
|
source |
Swiss-Prot : SWS_FT_FI10
|
|
4)
|
chain |
h |
residue |
33 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577
|
source |
Swiss-Prot : SWS_FT_FI11
|
|
5)
|
chain |
h |
residue |
63 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106
|
source |
Swiss-Prot : SWS_FT_FI12
|
|
6)
|
chain |
h |
residue |
68 |
type |
SITE |
sequence |
H
|
description |
Essential for function
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
7)
|
chain |
h |
residue |
65 |
type |
MOD_RES |
sequence |
S
|
description |
Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25527291
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
8)
|
chain |
h |
residue |
66 |
type |
MOD_RES |
sequence |
T
|
description |
(Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
9)
|
chain |
h |
residue |
76 |
type |
MOD_RES |
sequence |
G
|
description |
ADP-ribosylglycine => ECO:0000269|PubMed:28525742
|
source |
Swiss-Prot : SWS_FT_FI5
|
|
10)
|
chain |
h |
residue |
6 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603
|
source |
Swiss-Prot : SWS_FT_FI6
|
|
11)
|
chain |
h |
residue |
76 |
type |
CROSSLNK |
sequence |
G
|
description |
Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
|
source |
Swiss-Prot : SWS_FT_FI7
|
|
12)
|
chain |
h |
residue |
11 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
13)
|
chain |
h |
residue |
48 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
|
source |
Swiss-Prot : SWS_FT_FI8
|
|
14)
|
chain |
h |
residue |
27 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
|
source |
Swiss-Prot : SWS_FT_FI9
|
|
|
|