|
eF-site ID
|
4zux-P |
PDB Code
|
4zux |
Chain
|
P |
|
click to enlarge
|
|
Title
|
SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome |
Classification
|
Hydrolase/DNA |
Compound
|
Histone H3.2 |
Source
|
Xenopus laevis (African clawed frog) (SGF73_YEAST) |
|
Sequence
|
P: |
NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEN
VIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
|
|
Description
|
(1) |
Histone H3.2, Histone H4, Histone H2A type 1, Histone H2B 1.1, Ubiquitin carboxyl-terminal hydrolase 8, Transcription and mRNA export factor SUS1, SAGA-associated factor 11, Polyubiquitin-B, SAGA-associated factor 73/DNA Complex
|
|
Functional site
|
|
1)
|
chain |
P |
residue |
91 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62805
|
source |
Swiss-Prot : SWS_FT_FI13
|
|
2)
|
chain |
P |
residue |
44 |
type |
MOD_RES |
sequence |
K
|
description |
ADP-ribosylglycine => ECO:0000269|PubMed:28525742
|
source |
Swiss-Prot : SWS_FT_FI5
|
|
3)
|
chain |
P |
residue |
79 |
type |
MOD_RES |
sequence |
K
|
description |
ADP-ribosylglycine => ECO:0000269|PubMed:28525742
|
source |
Swiss-Prot : SWS_FT_FI5
|
|
4)
|
chain |
P |
residue |
31 |
type |
CROSSLNK |
sequence |
K
|
description |
Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
|
source |
Swiss-Prot : SWS_FT_FI7
|
|
5)
|
chain |
P |
residue |
51 |
type |
CROSSLNK |
sequence |
Y
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
|
source |
Swiss-Prot : SWS_FT_FI9
|
|
6)
|
chain |
P |
residue |
88 |
type |
CROSSLNK |
sequence |
Y
|
description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
|
source |
Swiss-Prot : SWS_FT_FI9
|
|
|
|