|
|
eF-site ID
|
4zux-O |
|
PDB Code
|
4zux |
|
Chain
|
O |
|
click to enlarge
|
|
|
Title
|
SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome |
|
Classification
|
Hydrolase/DNA |
|
Compound
|
Histone H3.2 |
|
Source
|
Xenopus laevis (African clawed frog) (SGF73_YEAST) |
|
|
Sequence
|
O: |
HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF
KTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT
IMPKDIQLARRIRGERA
|
|
|
Description
|
(1) |
Histone H3.2, Histone H4, Histone H2A type 1, Histone H2B 1.1, Ubiquitin carboxyl-terminal hydrolase 8, Transcription and mRNA export factor SUS1, SAGA-associated factor 11, Polyubiquitin-B, SAGA-associated factor 73/DNA Complex
|
|
Functional site
|
|
|
1)
|
chain |
O |
| residue |
86 |
| type |
MOD_RES |
| sequence |
S
|
| description |
Phosphoserine => ECO:0000250|UniProtKB:P84243
|
| source |
Swiss-Prot : SWS_FT_FI18
|
|
|
2)
|
chain |
O |
| residue |
115 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
|
| source |
Swiss-Prot : SWS_FT_FI19
|
|
|
3)
|
chain |
O |
| residue |
122 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
|
| source |
Swiss-Prot : SWS_FT_FI20
|
|
|
4)
|
chain |
O |
| residue |
110 |
| type |
LIPID |
| sequence |
C
|
| description |
S-palmitoyl cysteine => ECO:0000250|UniProtKB:Q71DI3
|
| source |
Swiss-Prot : SWS_FT_FI21
|
|
|
5)
|
chain |
O |
| residue |
64 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127
|
| source |
Swiss-Prot : SWS_FT_FI10
|
|
|
6)
|
chain |
O |
| residue |
41 |
| type |
MOD_RES |
| sequence |
Y
|
| description |
Phosphotyrosine => ECO:0000250|UniProtKB:Q71DI3
|
| source |
Swiss-Prot : SWS_FT_FI14
|
|
|
7)
|
chain |
O |
| residue |
56 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84228
|
| source |
Swiss-Prot : SWS_FT_FI15
|
|
|
8)
|
chain |
O |
| residue |
79 |
| type |
MOD_RES |
| sequence |
K
|
| description |
N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84228
|
| source |
Swiss-Prot : SWS_FT_FI15
|
|
|
9)
|
chain |
O |
| residue |
57 |
| type |
MOD_RES |
| sequence |
S
|
| description |
Phosphoserine => ECO:0000250|UniProtKB:Q71DI3
|
| source |
Swiss-Prot : SWS_FT_FI16
|
|
|
10)
|
chain |
O |
| residue |
80 |
| type |
MOD_RES |
| sequence |
T
|
| description |
Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3
|
| source |
Swiss-Prot : SWS_FT_FI17
|
|
|
11)
|
chain |
O |
| residue |
107 |
| type |
MOD_RES |
| sequence |
T
|
| description |
Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3
|
| source |
Swiss-Prot : SWS_FT_FI17
|
|
|
|