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eF-site ID
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4zux-L |
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PDB Code
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4zux |
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Chain
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L |
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click to enlarge
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Title
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SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome |
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Classification
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Hydrolase/DNA |
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Compound
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Histone H3.2 |
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Source
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Xenopus laevis (African clawed frog) (SGF73_YEAST) |
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Sequence
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L: |
KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYG
FGG
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Description
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(1) |
Histone H3.2, Histone H4, Histone H2A type 1, Histone H2B 1.1, Ubiquitin carboxyl-terminal hydrolase 8, Transcription and mRNA export factor SUS1, SAGA-associated factor 11, Polyubiquitin-B, SAGA-associated factor 73/DNA Complex
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Functional site
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1)
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chain |
L |
| residue |
79 |
| type |
MOD_RES |
| sequence |
K
|
| description |
ADP-ribosylglycine => ECO:0000269|PubMed:28525742
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| source |
Swiss-Prot : SWS_FT_FI5
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2)
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chain |
L |
| residue |
44 |
| type |
MOD_RES |
| sequence |
K
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| description |
ADP-ribosylglycine => ECO:0000269|PubMed:28525742
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| source |
Swiss-Prot : SWS_FT_FI5
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3)
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chain |
L |
| residue |
20 |
| type |
CROSSLNK |
| sequence |
K
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| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603
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| source |
Swiss-Prot : SWS_FT_FI6
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4)
|
chain |
L |
| residue |
31 |
| type |
CROSSLNK |
| sequence |
K
|
| description |
Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
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| source |
Swiss-Prot : SWS_FT_FI7
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5)
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chain |
L |
| residue |
91 |
| type |
CROSSLNK |
| sequence |
K
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| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62805
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| source |
Swiss-Prot : SWS_FT_FI13
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6)
|
chain |
L |
| residue |
51 |
| type |
CROSSLNK |
| sequence |
Y
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
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| source |
Swiss-Prot : SWS_FT_FI9
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|
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7)
|
chain |
L |
| residue |
88 |
| type |
CROSSLNK |
| sequence |
Y
|
| description |
Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
|
| source |
Swiss-Prot : SWS_FT_FI9
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