eF-site ID 4zup-B
PDB Code 4zup
Chain B

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Title Crystal structure of acetylpolyamine amidohydrolase from Mycoplana ramosa in complex with a hydroxamate inhibitor
Classification Hydrolase/Hydrolase inhibitor
Compound Acetylpolyamine aminohydrolase
Source (APHA_MYCRA)
Sequence B:  MRVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAV
KEAGFDDVVAPARHGLETVLKVHDAGYLNFLETAWDRWKA
AGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAI
SPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPGHHA
GIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGN
GTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAG
AGTTANYPMGRGTPYSVWGEALTDSLKRIAAFGAEAIVVS
LGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVME
GGYGVPEIGLNVANVLKGVAG
Description


Functional site

1) chain B
residue 100
type
sequence R
description binding site for residue GOL A 409
source : AC9

2) chain B
residue 195
type
sequence D
description binding site for residue ZN B 401
source : AD1

3) chain B
residue 197
type
sequence H
description binding site for residue ZN B 401
source : AD1

4) chain B
residue 284
type
sequence D
description binding site for residue ZN B 401
source : AD1

5) chain B
residue 146
type
sequence H
description binding site for residue ZN B 402
source : AD2

6) chain B
residue 193
type
sequence D
description binding site for residue K B 403
source : AD3

7) chain B
residue 195
type
sequence D
description binding site for residue K B 403
source : AD3

8) chain B
residue 197
type
sequence H
description binding site for residue K B 403
source : AD3

9) chain B
residue 216
type
sequence S
description binding site for residue K B 403
source : AD3

10) chain B
residue 217
type
sequence L
description binding site for residue K B 403
source : AD3

11) chain B
residue 206
type
sequence F
description binding site for residue K B 404
source : AD4

12) chain B
residue 209
type
sequence R
description binding site for residue K B 404
source : AD4

13) chain B
residue 212
type
sequence V
description binding site for residue K B 404
source : AD4

14) chain B
residue 243
type
sequence T
description binding site for residue K B 404
source : AD4

15) chain B
residue 117
type
sequence E
description binding site for residue 5XA B 405
source : AD5

16) chain B
residue 158
type
sequence H
description binding site for residue 5XA B 405
source : AD5

17) chain B
residue 159
type
sequence H
description binding site for residue 5XA B 405
source : AD5

18) chain B
residue 167
type
sequence G
description binding site for residue 5XA B 405
source : AD5

19) chain B
residue 168
type
sequence Y
description binding site for residue 5XA B 405
source : AD5

20) chain B
residue 195
type
sequence D
description binding site for residue 5XA B 405
source : AD5

21) chain B
residue 197
type
sequence H
description binding site for residue 5XA B 405
source : AD5

22) chain B
residue 225
type
sequence F
description binding site for residue 5XA B 405
source : AD5

23) chain B
residue 284
type
sequence D
description binding site for residue 5XA B 405
source : AD5

24) chain B
residue 323
type
sequence Y
description binding site for residue 5XA B 405
source : AD5

25) chain B
residue 96
type
sequence R
description binding site for residue GOL B 406
source : AD6

26) chain B
residue 1
type
sequence M
description binding site for residue NO3 B 407
source : AD7

27) chain B
residue 45
type
sequence F
description binding site for residue NO3 B 407
source : AD7

28) chain B
residue 340
type
sequence A
description binding site for residue NO3 B 407
source : AD7

29) chain B
residue 1
type
sequence M
description binding site for residue NO3 B 408
source : AD8

30) chain B
residue 146
type
sequence H
description binding site for residue NO3 B 408
source : AD8

31) chain B
residue 147
type
sequence K
description binding site for residue NO3 B 408
source : AD8

32) chain B
residue 148
type
sequence A
description binding site for residue NO3 B 408
source : AD8

33) chain B
residue 266
type
sequence L
description binding site for residue GOL B 409
source : AD9

34) chain B
residue 307
type
sequence T
description binding site for residue GOL B 409
source : AD9

35) chain B
residue 310
type
sequence A
description binding site for residue GOL B 409
source : AD9

36) chain B
residue 311
type
sequence S
description binding site for residue GOL B 409
source : AD9

37) chain B
residue 159
type ACT_SITE
sequence H
description Proton donor/acceptor => ECO:0000305|PubMed:21268586, ECO:0000305|PubMed:26200446
source Swiss-Prot : SWS_FT_FI1

38) chain B
residue 117
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:21268586, ECO:0007744|PDB:3Q9E
source Swiss-Prot : SWS_FT_FI2

39) chain B
residue 323
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:21268586, ECO:0007744|PDB:3Q9E
source Swiss-Prot : SWS_FT_FI2

40) chain B
residue 19
type BINDING
sequence Y
description BINDING => ECO:0000269|PubMed:21268586, ECO:0007744|PDB:3Q9E
source Swiss-Prot : SWS_FT_FI2

41) chain B
residue 106
type BINDING
sequence E
description BINDING => ECO:0000269|PubMed:21268586, ECO:0007744|PDB:3Q9C
source Swiss-Prot : SWS_FT_FI3

42) chain B
residue 195
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21268586, ECO:0000269|PubMed:26200446, ECO:0007744|PDB:3Q9B, ECO:0007744|PDB:3Q9E
source Swiss-Prot : SWS_FT_FI4

43) chain B
residue 197
type BINDING
sequence H
description BINDING => ECO:0000269|PubMed:21268586, ECO:0000269|PubMed:26200446, ECO:0007744|PDB:3Q9B, ECO:0007744|PDB:3Q9E
source Swiss-Prot : SWS_FT_FI4

44) chain B
residue 284
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:21268586, ECO:0000269|PubMed:26200446, ECO:0007744|PDB:3Q9B, ECO:0007744|PDB:3Q9E
source Swiss-Prot : SWS_FT_FI4

45) chain B
residue 323
type SITE
sequence Y
description Polarizes the scissile carbonyl of the substrate => ECO:0000305|PubMed:21268586
source Swiss-Prot : SWS_FT_FI5


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