eF-site ID 4ytz-B
PDB Code 4ytz
Chain B

click to enlarge
Title Rat xanthine oxidoreductase, C-terminal deletion protein variant, crystal grown without dithiothreitol
Classification OXIDOREDUCTASE
Compound Xanthine dehydrogenase/oxidase
Source (XDH_RAT)
Sequence B:  ADELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKLG
CGEGGCGACTVMISKYDRLQNKIVHFSVNACLAPICSLHH
VAVTTVEGIGNTQKLHPVQERIARSHGSQCGFCTPGIVMS
MYTLLRNQPEPTVEEIENAFQGNLCRCTGYRPILQGFRTF
AKSPSLFNPEDFKPLDPTQEPIFPPELLRLKDTPQKKLRF
EGERVTWIQASTMEELLDLKAQHPDAKLVVGNTEIGIEMK
FKNMLFPLIVCPAWIPELNSVVHGPEGISFGASCPLSLVE
SVLAEEIAKLPEQKTEVFRGVMEQLRWFAGKQVKSVASIG
GNIITASPISDLNPVFMASGAKLTLVSRGTRRTVRMDHTF
FPGYRKTLLRPEEILLSIEIPYSKEGEFFSAFKQASRRED
DIAKVTSGMRVLFKPGTIEVQELSLCFGGMADRTISALKT
TPKQLSKSWNEELLQSVCAGLAEELQLAPDAPGGMVEFRR
TLTLSFFFKFYLTVLQKLGRADLEDMCGKLDPANVQLFQE
VPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYENE
LSLRLVTSTRAHAKITSIDTSEAKKVPGFVCFLTAEDVPN
SNATGLFNDETVFAKDEVTCVGHIIGAVVADTPEHAQRAA
RGVKITYEDLPAIITIQDAINNNSFYGSEIKIEKGDLKKG
FSEADNVVSGELYIGGQEHFYLETNCTIAVPKGEAGEMEL
FVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKE
TRSTVVSTALALAAHKTGRPVRCMLDRDEDMLITGGRHPF
LAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERAL
FHMDNAYKIPNIRGTGRICKTNLPSNTAFRGFGGPQGMLI
AEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHFNQKLEGF
TLPRCWDECIASSQYLARKREVEKFNRENCWKKRGLCIIP
TKFGISFTLPFLNQGGALVHVYTDGSVLLTHGGTEMGQGL
HTKMVQVASRALKIPTSKIHISETSTNTVPNTSPTAASAS
ADLNGQGVYEACQTILKRLEPFKKKKPTGPWEAWVMDAYT
SAVSLSATGFYKTPNLGYSFETNSGNPFHYFSYGVACSEV
EIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQG
LGLFTMEELHYSPEGSLHTRGPSTYKIPAFGSIPIEFRVS
LLRDCPNKRAIYASKAVGEPPLFLASSIFFAIKDAIRAAR
AQHGDNAKQLFQLDSPATPEKIRNACVDQFTTL
Description


Functional site

1) chain B
residue 111
type
sequence Q
description binding site for residue FES B 1401
source : AC8

2) chain B
residue 112
type
sequence C
description binding site for residue FES B 1401
source : AC8

3) chain B
residue 113
type
sequence G
description binding site for residue FES B 1401
source : AC8

4) chain B
residue 115
type
sequence C
description binding site for residue FES B 1401
source : AC8

5) chain B
residue 147
type
sequence C
description binding site for residue FES B 1401
source : AC8

6) chain B
residue 148
type
sequence R
description binding site for residue FES B 1401
source : AC8

7) chain B
residue 149
type
sequence C
description binding site for residue FES B 1401
source : AC8

8) chain B
residue 42
type
sequence G
description binding site for residue FES B 1402
source : AC9

9) chain B
residue 43
type
sequence C
description binding site for residue FES B 1402
source : AC9

10) chain B
residue 44
type
sequence G
description binding site for residue FES B 1402
source : AC9

11) chain B
residue 46
type
sequence G
description binding site for residue FES B 1402
source : AC9

12) chain B
residue 48
type
sequence C
description binding site for residue FES B 1402
source : AC9

13) chain B
residue 49
type
sequence G
description binding site for residue FES B 1402
source : AC9

14) chain B
residue 51
type
sequence C
description binding site for residue FES B 1402
source : AC9

15) chain B
residue 71
type
sequence N
description binding site for residue FES B 1402
source : AC9

16) chain B
residue 73
type
sequence C
description binding site for residue FES B 1402
source : AC9

17) chain B
residue 45
type
sequence E
description binding site for residue FAD B 1403
source : AD1

18) chain B
residue 46
type
sequence G
description binding site for residue FAD B 1403
source : AD1

19) chain B
residue 256
type
sequence L
description binding site for residue FAD B 1403
source : AD1

20) chain B
residue 257
type
sequence V
description binding site for residue FAD B 1403
source : AD1

21) chain B
residue 258
type
sequence V
description binding site for residue FAD B 1403
source : AD1

22) chain B
residue 259
type
sequence G
description binding site for residue FAD B 1403
source : AD1

23) chain B
residue 260
type
sequence N
description binding site for residue FAD B 1403
source : AD1

24) chain B
residue 261
type
sequence T
description binding site for residue FAD B 1403
source : AD1

25) chain B
residue 262
type
sequence E
description binding site for residue FAD B 1403
source : AD1

26) chain B
residue 263
type
sequence I
description binding site for residue FAD B 1403
source : AD1

27) chain B
residue 300
type
sequence A
description binding site for residue FAD B 1403
source : AD1

28) chain B
residue 336
type
sequence F
description binding site for residue FAD B 1403
source : AD1

29) chain B
residue 344
type
sequence V
description binding site for residue FAD B 1403
source : AD1

30) chain B
residue 345
type
sequence A
description binding site for residue FAD B 1403
source : AD1

31) chain B
residue 346
type
sequence S
description binding site for residue FAD B 1403
source : AD1

32) chain B
residue 349
type
sequence G
description binding site for residue FAD B 1403
source : AD1

33) chain B
residue 350
type
sequence N
description binding site for residue FAD B 1403
source : AD1

34) chain B
residue 352
type
sequence I
description binding site for residue FAD B 1403
source : AD1

35) chain B
residue 353
type
sequence T
description binding site for residue FAD B 1403
source : AD1

36) chain B
residue 358
type
sequence S
description binding site for residue FAD B 1403
source : AD1

37) chain B
residue 359
type
sequence D
description binding site for residue FAD B 1403
source : AD1

38) chain B
residue 403
type
sequence L
description binding site for residue FAD B 1403
source : AD1

39) chain B
residue 802
type
sequence E
description binding site for residue URC B 1404
source : AD2

40) chain B
residue 880
type
sequence R
description binding site for residue URC B 1404
source : AD2

41) chain B
residue 914
type
sequence F
description binding site for residue URC B 1404
source : AD2

42) chain B
residue 1008
type
sequence S
description binding site for residue URC B 1404
source : AD2

43) chain B
residue 1009
type
sequence F
description binding site for residue URC B 1404
source : AD2

44) chain B
residue 1010
type
sequence T
description binding site for residue URC B 1404
source : AD2

45) chain B
residue 1078
type
sequence A
description binding site for residue URC B 1404
source : AD2

46) chain B
residue 1079
type
sequence A
description binding site for residue URC B 1404
source : AD2

47) chain B
residue 1261
type
sequence E
description binding site for residue URC B 1404
source : AD2

48) chain B
residue 839
type
sequence R
description binding site for residue BCT B 1405
source : AD3

49) chain B
residue 840
type
sequence H
description binding site for residue BCT B 1405
source : AD3

50) chain B
residue 877
type
sequence I
description binding site for residue BCT B 1405
source : AD3

51) chain B
residue 909
type
sequence T
description binding site for residue BCT B 1405
source : AD3

52) chain B
residue 910
type
sequence A
description binding site for residue BCT B 1405
source : AD3

53) chain B
residue 911
type
sequence F
description binding site for residue BCT B 1405
source : AD3

54) chain B
residue 914
type
sequence F
description binding site for residue BCT B 1405
source : AD3

55) chain B
residue 915
type
sequence G
description binding site for residue BCT B 1405
source : AD3

56) chain B
residue 918
type
sequence Q
description binding site for residue BCT B 1405
source : AD3

57) chain B
residue 867
type
sequence G
description binding site for residue CA B 1406
source : AD4

58) chain B
residue 870
type
sequence T
description binding site for residue CA B 1406
source : AD4

59) chain B
residue 871
type
sequence E
description binding site for residue CA B 1406
source : AD4

60) chain B
residue 874
type
sequence S
description binding site for residue CA B 1406
source : AD4

61) chain B
residue 907
type
sequence S
description binding site for residue CA B 1406
source : AD4

62) chain B
residue 908
type
sequence N
description binding site for residue CA B 1406
source : AD4

63) chain B
residue 740
type
sequence E
description binding site for residue CA B 1407
source : AD5

64) chain B
residue 741
type
sequence H
description binding site for residue CA B 1407
source : AD5

65) chain B
residue 743
type
sequence Y
description binding site for residue CA B 1407
source : AD5

66) chain B
residue 836
type
sequence T
description binding site for residue CA B 1407
source : AD5

67) chain B
residue 837
type
sequence G
description binding site for residue CA B 1407
source : AD5

68) chain B
residue 1261
type ACT_SITE
sequence E
description Proton acceptor
source Swiss-Prot : SWS_FT_FI1

69) chain B
residue 48
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:17301076, ECO:0007744|PDB:2E3T
source Swiss-Prot : SWS_FT_FI2

70) chain B
residue 51
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:17301076, ECO:0007744|PDB:2E3T
source Swiss-Prot : SWS_FT_FI2

71) chain B
residue 73
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:17301076, ECO:0007744|PDB:2E3T
source Swiss-Prot : SWS_FT_FI2

72) chain B
residue 112
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:17301076, ECO:0007744|PDB:2E3T
source Swiss-Prot : SWS_FT_FI2

73) chain B
residue 115
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:17301076, ECO:0007744|PDB:2E3T
source Swiss-Prot : SWS_FT_FI2

74) chain B
residue 147
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:17301076, ECO:0007744|PDB:2E3T
source Swiss-Prot : SWS_FT_FI2

75) chain B
residue 149
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:17301076, ECO:0007744|PDB:2E3T
source Swiss-Prot : SWS_FT_FI2

76) chain B
residue 43
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:17301076, ECO:0007744|PDB:2E3T
source Swiss-Prot : SWS_FT_FI2

77) chain B
residue 256
type BINDING
sequence L
description BINDING => ECO:0000269|PubMed:15878860, ECO:0000269|PubMed:17301076
source Swiss-Prot : SWS_FT_FI3

78) chain B
residue 346
type BINDING
sequence S
description BINDING => ECO:0000269|PubMed:15878860, ECO:0000269|PubMed:17301076
source Swiss-Prot : SWS_FT_FI3

79) chain B
residue 359
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:15878860, ECO:0000269|PubMed:17301076
source Swiss-Prot : SWS_FT_FI3

80) chain B
residue 403
type BINDING
sequence L
description BINDING => ECO:0000269|PubMed:15878860, ECO:0000269|PubMed:17301076
source Swiss-Prot : SWS_FT_FI3

81) chain B
residue 767
type BINDING
sequence Q
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

82) chain B
residue 798
type BINDING
sequence F
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

83) chain B
residue 912
type BINDING
sequence R
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

84) chain B
residue 914
type BINDING
sequence F
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

85) chain B
residue 1079
type BINDING
sequence A
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

86) chain B
residue 336
type BINDING
sequence F
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

87) chain B
residue 421
type BINDING
sequence K
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI4

88) chain B
residue 802
type BINDING
sequence E
description
source Swiss-Prot : SWS_FT_FI5

89) chain B
residue 880
type BINDING
sequence R
description
source Swiss-Prot : SWS_FT_FI5

90) chain B
residue 1010
type BINDING
sequence T
description
source Swiss-Prot : SWS_FT_FI5


Display surface

Download
Links