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eF-site ID
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4ylo-O |
PDB Code
|
4ylo |
Chain
|
O |
|
click to enlarge
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Title
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E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA |
Classification
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TRANSCRIPTION/DNA/RNA |
Compound
|
DNA-directed RNA polymerase subunit alpha |
Source
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(4YLO) |
|
Sequence
|
O: |
VYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQ
DPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFD
VQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQE
VYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDK
GKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRR
RKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMEL
VPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDD
VKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDL
LAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLS
ALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVG
RMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGE
VDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSL
GDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL
SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPI
ETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTD
EIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGE
SSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALM
GANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRG
GVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQ
NTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMR
VAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSR
DTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGD
ILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVP
NGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLS
EELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELG
LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDD
LAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINP
IEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA
KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDL
STFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKL
GDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDD
KMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPE
SFNVLLKEIRSLGINIELEDE
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Description
|
(1) |
E. coli RNA Polymerase alpha subunit, E. coli RNA Polymerase beta subunit, E. coli RNA Polymerase beta' subunit, E. coli RNA Polymerase omega subunit, E. coli RNA Polymerase sigma70 subunit/DNA Complex
|
|
Functional site
|
|
1)
|
chain |
O |
residue |
564 |
type |
|
sequence |
P
|
description |
binding site for nucleotide GTP 9 13
|
source |
: AD3
|
|
2)
|
chain |
O |
residue |
568 |
type |
|
sequence |
N
|
description |
binding site for nucleotide GTP 9 13
|
source |
: AD3
|
|
3)
|
chain |
O |
residue |
688 |
type |
|
sequence |
Q
|
description |
binding site for nucleotide GTP 9 13
|
source |
: AD3
|
|
4)
|
chain |
O |
residue |
1065 |
type |
|
sequence |
K
|
description |
binding site for nucleotide GTP 9 13
|
source |
: AD3
|
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