eF-site ID 4ylo-J PDB Code 4ylo Chain J click to enlarge Title E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA Classification TRANSCRIPTION/DNA/RNA Compound DNA-directed RNA polymerase subunit alpha Source (4YLO) Sequence J:  EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERD GLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQ TKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRD IERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGD EFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKR KKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVP LDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRN EKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMAL ELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDE VIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPA NGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAE RLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTV GRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGL KPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEII SEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVS KAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSA AQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI STHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDC GTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTA DILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGV CAHCYGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRT FHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGKLV ITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGG ETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELT GLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTD MPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDI TGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRR LVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGP EAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIE VIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEA NGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTE AAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRA AG Description (1)  E. coli RNA Polymerase alpha subunit, E. coli RNA Polymerase beta subunit, E. coli RNA Polymerase beta' subunit, E. coli RNA Polymerase omega subunit, E. coli RNA Polymerase sigma70 subunit/DNA Complex Functional site 1) chain J residue 70 type sequence C description binding site for residue ZN J 1501 source : AC4 2) chain J residue 72 type sequence C description binding site for residue ZN J 1501 source : AC4 3) chain J residue 74 type sequence K description binding site for residue ZN J 1501 source : AC4 4) chain J residue 85 type sequence C description binding site for residue ZN J 1501 source : AC4 5) chain J residue 88 type sequence C description binding site for residue ZN J 1501 source : AC4 6) chain J residue 814 type sequence C description binding site for residue ZN J 1502 source : AC5 7) chain J residue 883 type sequence R description binding site for residue ZN J 1502 source : AC5 8) chain J residue 888 type sequence C description binding site for residue ZN J 1502 source : AC5 9) chain J residue 890 type sequence T description binding site for residue ZN J 1502 source : AC5 10) chain J residue 895 type sequence C description binding site for residue ZN J 1502 source : AC5 11) chain J residue 898 type sequence C description binding site for residue ZN J 1502 source : AC5 12) chain J residue 460 type sequence D description binding site for residue MG J 1503 source : AC6 13) chain J residue 462 type sequence D description binding site for residue MG J 1503 source : AC6 14) chain J residue 464 type sequence D description binding site for residue MG J 1503 source : AC6 15) chain J residue 463 type sequence G description binding site for nucleotide GTP 6 13 source : AD2 16) chain J residue 70 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 17) chain J residue 72 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 18) chain J residue 85 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 19) chain J residue 88 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 20) chain J residue 460 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 21) chain J residue 462 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 22) chain J residue 464 type DNA_BIND sequence D description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 23) chain J residue 814 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 24) chain J residue 888 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 25) chain J residue 895 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 26) chain J residue 898 type DNA_BIND sequence C description H-T-H motif => ECO:0000255|HAMAP-Rule:MF_00963 source Swiss-Prot : SWS_FT_FI1 27) chain J residue 983 type MOD_RES sequence K description N6-acetyllysine => ECO:0000255|HAMAP-Rule:MF_01322, ECO:0000269|PubMed:18723842 source Swiss-Prot : SWS_FT_FI3

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