eF-site ID 4yhh-D
PDB Code 4yhh
Chain D

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Title Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with tigecycline
Classification RIBOSOME
Compound 16S ribosomal RNA
Source ORGANISM_SCIENTIFIC: Thermus thermophilus HB8;
Sequence D:  GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPG
QHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEE
ASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLV
RHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQN
LEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ
LVIEFYSR
Description


Functional site

1) chain D
residue 9
type
sequence C
description binding site for residue ZN D 301
source : AM1

2) chain D
residue 12
type
sequence C
description binding site for residue ZN D 301
source : AM1

3) chain D
residue 19
type
sequence L
description binding site for residue ZN D 301
source : AM1

4) chain D
residue 22
type
sequence K
description binding site for residue ZN D 301
source : AM1

5) chain D
residue 26
type
sequence C
description binding site for residue ZN D 301
source : AM1

6) chain D
residue 31
type
sequence C
description binding site for residue ZN D 301
source : AM1

7) chain D
residue 97-121
type prosite
sequence LESRLDNVVYRLGFAVSRRQARQLV
description RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRlgfAvSrrqARqLV
source prosite : PS00632

8) chain D
residue 12
type MOD_RES
sequence C
description 3-methylthioaspartic acid => ECO:0000269|PubMed:16287167, ECO:0000269|PubMed:25775268
source Swiss-Prot : SWS_FT_FI1

9) chain D
residue 26
type MOD_RES
sequence C
description 3-methylthioaspartic acid => ECO:0000269|PubMed:16287167, ECO:0000269|PubMed:25775268
source Swiss-Prot : SWS_FT_FI1

10) chain D
residue 31
type MOD_RES
sequence C
description 3-methylthioaspartic acid => ECO:0000269|PubMed:16287167, ECO:0000269|PubMed:25775268
source Swiss-Prot : SWS_FT_FI1


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