eF-site ID 4ydi-GHL
PDB Code 4ydi
Chain G, H, L

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Title Crystal structure of broad and potently neutralizing VRC01-class antibody Z258-VRC27.01, isolated from human donor Z258, in complex with HIV-1 gp120 from clade A strain Q23.17
Classification IMMUNE SYSTEM
Compound Envelope glycoprotein gp160
Source Human immunodeficiency virus 1 (4YDI)
Sequence G:  VWRDADTTLFCASDAKAYETEKHNVWATHACVPTDPNPQE
IHLDNVTEKFNMWKNNMVEQMHTDIISLWDQSLKPCVKLT
GGSAITQACPKVSFEPIPIHYCTPAGFAILKCKDEGFNGT
GLCKNVSTVQCTHGIKPVVSTQLLLNGSLAEKNITIRSEN
ITNNAKIIIVQLVQPVTIKCIRPDIRQAHCNVTRSRWNKT
LQEVAEKLRTYFGNKTIIFANSSGGDLEITTHSFNCGGEF
FYCNTSGLFNSTWYVNSTWNDTNDTITLPCRIKQIINMWQ
RAGQAMYAPPIPGVIKCESNITGLLLTRDGGKDNNVNETF
RPGGGDMRDNWRSELYKYKVVEI
H:  QRLVQSGPQVRKPGSSVRISCETSGYTFNAYILHWFRQAP
GRSFEWMGWIKPKFGAVNYAHSFQGRITLTRDIYRETAFL
DLTGLRFDDTAVYYCARDRLYDGSSWRLDPWGQGTRVVVS
SASTKGPSVFPLLGCLVKDYFPEPVTVSWNSGALTSGVHT
FPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNT
KVDKKVEPK
L:  IQMTQSPSSLAVSVGGRVTITCRASQGIGSDLHWYQQKRG
RPPKILIHHASAREEGVPSRFGGSGSHTPFIFTINDLQLD
DVATYYCQVIESFGQGTRLDINRTVAAPSVFIFPPSDEQL
KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTE
QDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV
TKSFNRGE
Description


Functional site

1) chain H
residue 194-200
type prosite
sequence YICNVNH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH
source prosite : PS00290

2) chain L
residue 192-198
type prosite
sequence YACEVTH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YICNVNH
source prosite : PS00290


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