|
eF-site ID
|
4x67-J |
PDB Code
|
4x67 |
Chain
|
J |
|
click to enlarge
|
|
Title
|
Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions. |
Classification
|
TRANSCRIPTION/DNA |
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
Source
|
ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
|
Sequence
|
J: |
MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLG
LKRYCCRRMILTHVDLIEKFLRYNP
|
|
Description
|
(1) |
DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerases I, II, and III subunit RPABC1, iaDNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4/RNA Complex
|
|
Functional site
|
|
1)
|
chain |
J |
residue |
7 |
type |
|
sequence |
C
|
description |
binding site for residue ZN J 101
|
source |
: AC7
|
|
2)
|
chain |
J |
residue |
10 |
type |
|
sequence |
C
|
description |
binding site for residue ZN J 101
|
source |
: AC7
|
|
3)
|
chain |
J |
residue |
45 |
type |
|
sequence |
C
|
description |
binding site for residue ZN J 101
|
source |
: AC7
|
|
4)
|
chain |
J |
residue |
46 |
type |
|
sequence |
C
|
description |
binding site for residue ZN J 101
|
source |
: AC7
|
|
5)
|
chain |
J |
residue |
10 |
type |
ZN_FING |
sequence |
C
|
description |
C4-type
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
6)
|
chain |
J |
residue |
45 |
type |
ZN_FING |
sequence |
C
|
description |
C4-type
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
7)
|
chain |
J |
residue |
46 |
type |
ZN_FING |
sequence |
C
|
description |
C4-type
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
8)
|
chain |
J |
residue |
2-11 |
type |
prosite |
sequence |
IVPVRCFSCG
|
description |
RNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IVPVrCFSCG
|
source |
prosite : PS01112
|
|
|
|