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eF-site ID
|
4x67-C |
PDB Code
|
4x67 |
Chain
|
C |
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click to enlarge
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Title
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Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions. |
Classification
|
TRANSCRIPTION/DNA |
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
Source
|
ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
|
Sequence
|
C: |
EEGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIP
TLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEY
SRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVS
NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKG
IAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWP
QSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQ
VVVRGIDTLQKKVASILLALTQMDQD
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Description
|
(1) |
DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerases I, II, and III subunit RPABC1, iaDNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4/RNA Complex
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Functional site
|
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1)
|
chain |
C |
residue |
86 |
type |
|
sequence |
C
|
description |
binding site for residue ZN C 401
|
source |
: AC4
|
|
2)
|
chain |
C |
residue |
88 |
type |
|
sequence |
C
|
description |
binding site for residue ZN C 401
|
source |
: AC4
|
|
3)
|
chain |
C |
residue |
92 |
type |
|
sequence |
C
|
description |
binding site for residue ZN C 401
|
source |
: AC4
|
|
4)
|
chain |
C |
residue |
95 |
type |
|
sequence |
C
|
description |
binding site for residue ZN C 401
|
source |
: AC4
|
|
5)
|
chain |
C |
residue |
31-71 |
type |
prosite |
sequence |
NSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLI
P
|
description |
RNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSLRRvmiaeiptlAidsVevetNtTvlaDEfIAhRLGLIP
|
source |
prosite : PS00446
|
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