eF-site ID 4x67-A
PDB Code 4x67
Chain A

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Title Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions.
Classification TRANSCRIPTION/DNA
Compound DNA-directed RNA polymerase II subunit RPB1
Source ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c);
Sequence A:  GQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMD
ETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFG
HIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM
RQALAIKDSKKRFAAIWTLCKTKMVCETDVPSLVSRGGCG
NTQPTIRKDGLKLVGSWKLRVLSTEEILNIFKHISVKDFT
SLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGED
DLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV
ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNL
MGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVV
TPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKR
AGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRV
KVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAE
LSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTF
IELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSV
AIPNGIHLQRFDEGTTLLSPKDNGMLIIDGQIIFGVVEKK
TVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHN
GFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQAN
LLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDL
NNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFV
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGG
REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSL
GNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD
LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDR
KFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSD
LTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCC
LLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHP
GEMVGVLAAQSIGEPATQMTLKKVTSGVPRLKEILNVAKN
MKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIAS
EIYYDPDPRSTVIPEDEEIIQLHFSQQSPWLLRLELDRAA
MNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR
VVAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKV
PSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNS
FIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALL
VDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFE
AGASAELDDCRGVSENVILGQMAPIGTGAFDVMI
Description (1)  DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerases I, II, and III subunit RPABC1, iaDNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4/RNA Complex


Functional site

1) chain A
residue 107
type
sequence C
description binding site for residue ZN A 1801
source : AC1

2) chain A
residue 108
type
sequence M
description binding site for residue ZN A 1801
source : AC1

3) chain A
residue 110
type
sequence C
description binding site for residue ZN A 1801
source : AC1

4) chain A
residue 148
type
sequence C
description binding site for residue ZN A 1801
source : AC1

5) chain A
residue 166
type
sequence G
description binding site for residue ZN A 1801
source : AC1

6) chain A
residue 167
type
sequence C
description binding site for residue ZN A 1801
source : AC1

7) chain A
residue 67
type
sequence C
description binding site for residue ZN A 1802
source : AC2

8) chain A
residue 68
type
sequence Q
description binding site for residue ZN A 1802
source : AC2

9) chain A
residue 70
type
sequence C
description binding site for residue ZN A 1802
source : AC2

10) chain A
residue 77
type
sequence C
description binding site for residue ZN A 1802
source : AC2

11) chain A
residue 80
type
sequence H
description binding site for residue ZN A 1802
source : AC2

12) chain A
residue 483
type catalytic
sequence D
description 788
source MCSA : MCSA1

13) chain A
residue 485
type catalytic
sequence D
description 788
source MCSA : MCSA1

14) chain A
residue 483
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1

15) chain A
residue 485
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1

16) chain A
residue 107
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

17) chain A
residue 110
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

18) chain A
residue 148
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

19) chain A
residue 167
type ZN_FING
sequence C
description C4-type
source Swiss-Prot : SWS_FT_FI1

20) chain A
residue 481
type ZN_FING
sequence D
description C4-type
source Swiss-Prot : SWS_FT_FI1


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