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eF-site ID
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4x67-B |
PDB Code
|
4x67 |
Chain
|
B |
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click to enlarge
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Title
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Crystal structure of elongating yeast RNA polymerase II stalled at oxidative Cyclopurine DNA lesions. |
Classification
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TRANSCRIPTION/DNA |
Compound
|
DNA-directed RNA polymerase II subunit RPB1 |
Source
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ORGANISM_COMMON: Baker's yeast; ORGANISM_SCIENTIFIC: Saccharomyces cerevisiae (strain ATCC 204508 / S288c); |
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Sequence
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B: |
DESAPITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTL
QDIICEDSTLIISFGKIYVTKPMVNESDGVTHALYPQEAR
LRNLTYSSGLFVDVKKKVFIGRLPIMLRSKNCYLSEATES
DLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFK
KAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSAR
TIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVND
WQMLEMLKPCVEDGFVIQDRETALDFIGKEKRIQYAKDIL
QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQD
DRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTV
ELAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLN
RYTYSSTLSHLRRTNTPIAKPRQLHNTHWGLVCPAETPEG
QACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYV
PHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDIN
PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKE
LKVRKGHIAKLMATEYQDEYTWSSLLNEGLVEYIDAEEEE
SILIAMQPEDLEPAEADVDPAKRIRVSHHATTFTHCEIHP
SMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNY
NVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIV
AIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKK
YGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRV
SGEDVIIGKTTPISSKRDASTPLRSTENGIVDQVLVTTNQ
DGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRRED
MPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALS
GNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG
KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQP
VEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAF
RVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPY
AAKLLFQELMAMNITPRLYTDRSRDF
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Description
|
(1) |
DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerases I, II, and III subunit RPABC1, iaDNA-directed RNA polymerases I, II, and III subunit RPABC2, DNA-directed RNA polymerases I, II, and III subunit RPABC3, DNA-directed RNA polymerase II subunit RPB9, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerases I, II, and III subunit RPABC4/RNA Complex
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Functional site
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1)
|
chain |
B |
residue |
1163 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1301
|
source |
: AC3
|
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2)
|
chain |
B |
residue |
1166 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1301
|
source |
: AC3
|
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3)
|
chain |
B |
residue |
1182 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1301
|
source |
: AC3
|
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4)
|
chain |
B |
residue |
1185 |
type |
|
sequence |
C
|
description |
binding site for residue ZN B 1301
|
source |
: AC3
|
|
5)
|
chain |
B |
residue |
837 |
type |
catalytic |
sequence |
D
|
description |
788
|
source |
MCSA : MCSA1
|
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6)
|
chain |
B |
residue |
977-989 |
type |
prosite |
sequence |
GDKFASRHGQKGT
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
|
source |
prosite : PS01166
|
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7)
|
chain |
B |
residue |
1185 |
type |
BINDING |
sequence |
C
|
description |
|
source |
Swiss-Prot : SWS_FT_FI2
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