eF-site ID 4wqt-D
PDB Code 4wqt
Chain D

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Title Thermus thermophilus RNA polymerase complexed with an RNA cleavage stimulating factor (a GreA/Gfh1 chimeric protein)
Classification TRANSFERASE/TRANSCRIPTION
Compound DNA-directed RNA polymerase subunit alpha
Source ORGANISM_SCIENTIFIC: Thermus thermophilus HB8;
Sequence D:  MKKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPE
RDGLFDERIFGPIKDRRYRMGHIELATPAAHIWFVKDVPS
KIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKR
QLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQE
LAPGVVSRLDGVALYRFPRRVRVEYVPKDYRVQPHMNVVV
PEGARVEAGDKIVAAIDPEEEVIAEAEGVVHLHEPASILV
VKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRV
EVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEK
ELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILE
AVPVLPPDLRATSDLNDLYRRLINRNNRLKKLLAQGAPEI
IIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTD
ILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLP
KRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKD
EVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQS
IQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLS
AHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLE
FATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFAN
PDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARI
VAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGME
KTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLE
EADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQ
AVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLM
QKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTA
LRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQP
DEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRY
LSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCY
GYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGG
VAGAADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEE
TEEKLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPL
TRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHD
KHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNE
RLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTH
VLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQ
VVDQKTLKAIEEAR
Description


Functional site

1) chain D
residue 1112
type
sequence C
description binding site for residue ZN D 2001
source : AC1

2) chain D
residue 1194
type
sequence C
description binding site for residue ZN D 2001
source : AC1

3) chain D
residue 1200
type
sequence V
description binding site for residue ZN D 2001
source : AC1

4) chain D
residue 1201
type
sequence C
description binding site for residue ZN D 2001
source : AC1

5) chain D
residue 1204
type
sequence C
description binding site for residue ZN D 2001
source : AC1

6) chain D
residue 739
type
sequence D
description binding site for residue MG D 2002
source : AC2

7) chain D
residue 741
type
sequence D
description binding site for residue MG D 2002
source : AC2

8) chain D
residue 743
type
sequence D
description binding site for residue MG D 2002
source : AC2

9) chain D
residue 1201
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:16298991
source Swiss-Prot : SWS_FT_FI1

10) chain D
residue 1204
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:16298991
source Swiss-Prot : SWS_FT_FI1

11) chain D
residue 743
type BINDING
sequence D
description BINDING => ECO:0000269|PubMed:16298991
source Swiss-Prot : SWS_FT_FI1

12) chain D
residue 1112
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:16298991
source Swiss-Prot : SWS_FT_FI1

13) chain D
residue 1194
type BINDING
sequence C
description BINDING => ECO:0000269|PubMed:16298991
source Swiss-Prot : SWS_FT_FI1


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