eF-site ID 4wqt-C
PDB Code 4wqt
Chain C

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Title Thermus thermophilus RNA polymerase complexed with an RNA cleavage stimulating factor (a GreA/Gfh1 chimeric protein)
Classification TRANSFERASE/TRANSCRIPTION
Compound DNA-directed RNA polymerase subunit alpha
Source ORGANISM_SCIENTIFIC: Thermus thermophilus HB8;
Sequence C:  MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRE
NVGIQAAFRETFPIEEGLVLDFLEYRLGEPPFPQDECREK
DLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGS
FIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLP
KRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQET
LARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGD
PPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLS
GRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDID
HLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDS
LTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRH
KRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEG
ANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYM
TATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSP
EEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQT
QAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKV
DGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVG
QRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFED
AIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDI
PHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSDTSLRV
PPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRK
LQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILN
PLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGAKEP
EIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGL
VTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQM
FIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRF
GEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNAAYEAIIK
GEDVPEPSVPESFRVLVKELQALALDVQTLDEKDNPVDIF
Description


Functional site

1) chain C
residue 836-848
type prosite
sequence GDKLANRHGNKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
source prosite : PS01166


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