|
eF-site ID
|
4ub3-DPT |
PDB Code
|
4ub3 |
Chain
|
D, P, T |
|
click to enlarge
|
|
Title
|
DNA polymerase beta closed product complex with a templating cytosine and 8-oxodGMP, 60 s |
Classification
|
TRANSFERASE, LYASE/DNA |
Compound
|
5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' |
Source
|
(DPOLB_HUMAN) |
|
Sequence
|
D: |
GTCGG
|
P: |
GCTGATGCGCX
|
T: |
CCGACCGCGCATCAGC
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
P |
residue |
11 |
type |
|
sequence |
X
|
description |
binding site for residue MG P 101
|
source |
: AC1
|
|
2)
|
chain |
P |
residue |
11 |
type |
|
sequence |
X
|
description |
binding site for residue MG A 401
|
source |
: AC2
|
|
3)
|
chain |
P |
residue |
11 |
type |
|
sequence |
X
|
description |
binding site for residue PPV A 402
|
source |
: AC3
|
|
4)
|
chain |
P |
residue |
10 |
type |
|
sequence |
C
|
description |
binding site for residue NA A 403
|
source |
: AC4
|
|
5)
|
chain |
P |
residue |
11 |
type |
|
sequence |
X
|
description |
binding site for residue NA A 403
|
source |
: AC4
|
|
|
|