eF-site ID 4u1l-ABCDEF
PDB Code 4u1l
Chain A, B, C, D, E, F

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Title HLA class I micropolymorphisms determine peptide-HLA landscape and dictate differential HIV-1 escape through identical epitopes
Classification IMMUNE SYSTEM
Compound HLA class I histocompatibility antigen, B-81 alpha chain
Source Homo sapiens (Human) (Q90VG9_9HIV1)
Sequence A:  MGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSD
AASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLR
NLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHNQYAYD
GKDYIALNEDLRSWTAADTAAQISQRKLEAARVAEQLRAY
LEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEA
TLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDR
TFQKWTAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
B:  MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDL
LKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA
CRVNHVTLSQPKIVKWDRDM
C:  RPQVPLRPM
D:  MGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSD
AASPREEPRAPWIEQEGPEYWDRNTQIYKAQAQTDRESLR
NLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHNQYAYD
GKDYIALNEDLRSWTAADTAAQISQRKLEAARVAEQLRAY
LEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEA
TLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDR
TFQKWTAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP
E:  MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDL
LKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYA
CRVNHVTLSQPKIVKWDRDM
F:  RPQVPLRPM
Description


Functional site

1) chain A
residue 44
type
sequence R
description binding site for residue GOL A 301
source : AC1

2) chain A
residue 45
type
sequence E
description binding site for residue GOL A 301
source : AC1

3) chain A
residue 57
type
sequence P
description binding site for residue GOL A 301
source : AC1

4) chain A
residue 60
type
sequence W
description binding site for residue GOL A 301
source : AC1

5) chain A
residue 61
type
sequence D
description binding site for residue GOL A 301
source : AC1

6) chain A
residue 64
type
sequence T
description binding site for residue GOL A 301
source : AC1

7) chain D
residue 72
type
sequence Q
description binding site for residue GOL A 301
source : AC1

8) chain D
residue 75
type
sequence R
description binding site for residue GOL A 301
source : AC1

9) chain A
residue 80
type
sequence N
description binding site for residue GOL A 302
source : AC2

10) chain A
residue 83
type
sequence G
description binding site for residue GOL A 302
source : AC2

11) chain A
residue 84
type
sequence Y
description binding site for residue GOL A 302
source : AC2

12) chain A
residue 146
type
sequence K
description binding site for residue GOL A 302
source : AC2

13) chain D
residue 154
type
sequence E
description binding site for residue GOL A 302
source : AC2

14) chain D
residue 157
type
sequence R
description binding site for residue GOL A 302
source : AC2

15) chain D
residue 158
type
sequence A
description binding site for residue GOL A 302
source : AC2

16) chain D
residue 161
type
sequence E
description binding site for residue GOL A 302
source : AC2

17) chain A
residue 70
type
sequence Q
description binding site for residue EDO A 303
source : AC3

18) chain A
residue 97
type
sequence S
description binding site for residue EDO A 303
source : AC3

19) chain A
residue 99
type
sequence Y
description binding site for residue EDO A 303
source : AC3

20) chain A
residue 114
type
sequence N
description binding site for residue EDO A 303
source : AC3

21) chain A
residue 116
type
sequence Y
description binding site for residue EDO A 303
source : AC3

22) chain C
residue 3
type
sequence Q
description binding site for residue EDO A 303
source : AC3

23) chain A
residue 62
type
sequence R
description binding site for residue EDO A 304
source : AC4

24) chain A
residue 65
type
sequence Q
description binding site for residue EDO A 304
source : AC4

25) chain A
residue 62
type
sequence R
description binding site for residue EDO A 305
source : AC5

26) chain D
residue 144
type
sequence Q
description binding site for residue EDO A 305
source : AC5

27) chain D
residue 145
type
sequence R
description binding site for residue EDO A 305
source : AC5

28) chain D
residue 148
type
sequence E
description binding site for residue EDO A 305
source : AC5

29) chain A
residue 73
type
sequence T
description binding site for residue EDO A 306
source : AC6

30) chain A
residue 74
type
sequence D
description binding site for residue EDO A 306
source : AC6

31) chain A
residue 77
type
sequence S
description binding site for residue EDO A 306
source : AC6

32) chain C
residue 7
type
sequence R
description binding site for residue EDO A 306
source : AC6

33) chain A
residue 115
type
sequence Q
description binding site for residue EDO A 307
source : AC7

34) chain A
residue 116
type
sequence Y
description binding site for residue EDO A 307
source : AC7

35) chain A
residue 122
type
sequence D
description binding site for residue EDO A 307
source : AC7

36) chain A
residue 124
type
sequence I
description binding site for residue EDO A 307
source : AC7

37) chain A
residue 125
type
sequence A
description binding site for residue EDO A 307
source : AC7

38) chain A
residue 134
type
sequence T
description binding site for residue EDO A 307
source : AC7

39) chain B
residue 60
type
sequence W
description binding site for residue EDO A 307
source : AC7

40) chain A
residue 150
type
sequence A
description binding site for residue SO4 A 308
source : AC8

41) chain A
residue 151
type
sequence R
description binding site for residue SO4 A 308
source : AC8

42) chain D
residue 83
type
sequence G
description binding site for residue SO4 A 308
source : AC8

43) chain D
residue 84
type
sequence Y
description binding site for residue SO4 A 308
source : AC8

44) chain D
residue 85
type
sequence Y
description binding site for residue SO4 A 308
source : AC8

45) chain D
residue 86
type
sequence N
description binding site for residue SO4 A 308
source : AC8

46) chain A
residue 8
type
sequence F
description binding site for residue SO4 A 309
source : AC9

47) chain A
residue 27
type
sequence Y
description binding site for residue SO4 A 309
source : AC9

48) chain A
residue 29
type
sequence D
description binding site for residue SO4 A 309
source : AC9

49) chain A
residue 30
type
sequence D
description binding site for residue SO4 A 309
source : AC9

50) chain A
residue 8
type
sequence F
description binding site for residue EDO B 101
source : AD1

51) chain A
residue 98
type
sequence M
description binding site for residue EDO B 101
source : AD1

52) chain A
residue 115
type
sequence Q
description binding site for residue EDO B 101
source : AD1

53) chain B
residue 57
type
sequence S
description binding site for residue EDO B 101
source : AD1

54) chain B
residue 58
type
sequence K
description binding site for residue EDO B 101
source : AD1

55) chain A
residue 57
type
sequence P
description binding site for residue GOL D 301
source : AD2

56) chain D
residue 38
type
sequence S
description binding site for residue GOL D 301
source : AD2

57) chain D
residue 68
type
sequence K
description binding site for residue GOL D 301
source : AD2

58) chain D
residue 71
type
sequence A
description binding site for residue GOL D 301
source : AD2

59) chain D
residue 72
type
sequence Q
description binding site for residue GOL D 301
source : AD2

60) chain D
residue 75
type
sequence R
description binding site for residue GOL D 301
source : AD2

61) chain D
residue 62
type
sequence R
description binding site for residue EDO D 302
source : AD3

62) chain D
residue 65
type
sequence Q
description binding site for residue EDO D 302
source : AD3

63) chain D
residue 70
type
sequence Q
description binding site for residue EDO D 303
source : AD4

64) chain D
residue 99
type
sequence Y
description binding site for residue EDO D 303
source : AD4

65) chain D
residue 114
type
sequence N
description binding site for residue EDO D 303
source : AD4

66) chain D
residue 116
type
sequence Y
description binding site for residue EDO D 303
source : AD4

67) chain F
residue 3
type
sequence Q
description binding site for residue EDO D 303
source : AD4

68) chain A
residue 61
type
sequence D
description binding site for residue EDO D 304
source : AD5

69) chain D
residue 14
type
sequence R
description binding site for residue EDO D 304
source : AD5

70) chain D
residue 20
type
sequence P
description binding site for residue EDO D 304
source : AD5

71) chain D
residue 21
type
sequence R
description binding site for residue EDO D 304
source : AD5

72) chain D
residue 38
type
sequence S
description binding site for residue EDO D 304
source : AD5

73) chain D
residue 39
type
sequence D
description binding site for residue EDO D 304
source : AD5

74) chain D
residue 75
type
sequence R
description binding site for residue EDO D 304
source : AD5

75) chain D
residue 73
type
sequence T
description binding site for residue EDO D 305
source : AD6

76) chain D
residue 74
type
sequence D
description binding site for residue EDO D 305
source : AD6

77) chain D
residue 77
type
sequence S
description binding site for residue EDO D 305
source : AD6

78) chain D
residue 95
type
sequence L
description binding site for residue EDO D 305
source : AD6

79) chain F
residue 7
type
sequence R
description binding site for residue EDO D 305
source : AD6

80) chain D
residue 27
type
sequence Y
description binding site for residue EDO D 306
source : AD7

81) chain D
residue 29
type
sequence D
description binding site for residue EDO D 306
source : AD7

82) chain D
residue 30
type
sequence D
description binding site for residue EDO D 306
source : AD7

83) chain D
residue 122
type
sequence D
description binding site for residue EDO D 307
source : AD8

84) chain D
residue 125
type
sequence A
description binding site for residue EDO D 307
source : AD8

85) chain D
residue 134
type
sequence T
description binding site for residue EDO D 307
source : AD8

86) chain A
residue 68
type
sequence K
description binding site for residue EDO D 308
source : AD9

87) chain D
residue 13
type
sequence S
description binding site for residue EDO D 308
source : AD9

88) chain D
residue 19
type
sequence E
description binding site for residue EDO D 308
source : AD9

89) chain A
residue 83
type
sequence G
description binding site for residue EDO D 309
source : AE1

90) chain A
residue 84
type
sequence Y
description binding site for residue EDO D 309
source : AE1

91) chain A
residue 86
type
sequence N
description binding site for residue EDO D 309
source : AE1

92) chain D
residue 150
type
sequence A
description binding site for residue EDO D 309
source : AE1

93) chain D
residue 151
type
sequence R
description binding site for residue EDO D 309
source : AE1

94) chain F
residue 7
type
sequence R
description binding site for residue EDO D 309
source : AE1

95) chain D
residue 19
type
sequence E
description binding site for residue EDO D 310
source : AE2

96) chain D
residue 20
type
sequence P
description binding site for residue EDO D 310
source : AE2

97) chain D
residue 79
type
sequence R
description binding site for residue EDO D 310
source : AE2

98) chain D
residue 12
type
sequence V
description binding site for residue EDO E 101
source : AE3

99) chain D
residue 92
type
sequence S
description binding site for residue EDO E 101
source : AE3

100) chain E
residue 32
type
sequence P
description binding site for residue EDO E 101
source : AE3

101) chain E
residue 33
type
sequence S
description binding site for residue EDO E 101
source : AE3

102) chain E
residue 34
type
sequence D
description binding site for residue EDO E 101
source : AE3

103) chain D
residue 21
type
sequence R
description binding site for residue EDO E 102
source : AE4

104) chain E
residue 33
type
sequence S
description binding site for residue EDO E 102
source : AE4

105) chain E
residue 34
type
sequence D
description binding site for residue EDO E 102
source : AE4

106) chain D
residue 55
type
sequence E
description binding site for residue EDO F 101
source : AE5

107) chain D
residue 58
type
sequence E
description binding site for residue EDO F 101
source : AE5

108) chain D
residue 59
type
sequence Y
description binding site for residue EDO F 101
source : AE5

109) chain F
residue 1
type
sequence R
description binding site for residue EDO F 101
source : AE5

110) chain B
residue 78-84
type prosite
sequence YACRVNH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH
source prosite : PS00290

111) chain A
residue 257-263
type prosite
sequence YTCHVQH
description IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH
source prosite : PS00290

112) chain B
residue 2
type MOD_RES
sequence Q
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

113) chain D
residue 143
type MOD_RES
sequence S
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

114) chain D
residue 146
type MOD_RES
sequence K
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

115) chain D
residue 152
type MOD_RES
sequence V
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

116) chain D
residue 159
type MOD_RES
sequence Y
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

117) chain D
residue 171
type MOD_RES
sequence Y
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

118) chain E
residue 2
type MOD_RES
sequence Q
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

119) chain A
residue 143
type MOD_RES
sequence S
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

120) chain A
residue 146
type MOD_RES
sequence K
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

121) chain A
residue 152
type MOD_RES
sequence V
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

122) chain A
residue 159
type MOD_RES
sequence Y
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

123) chain A
residue 171
type MOD_RES
sequence Y
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

124) chain D
residue 63
type MOD_RES
sequence N
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

125) chain D
residue 84
type MOD_RES
sequence Y
description Pyrrolidone carboxylic acid; in form pI 5.3 => ECO:0000269|PubMed:7554280
source Swiss-Prot : SWS_FT_FI1

126) chain B
residue 1
type CARBOHYD
sequence I
description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI2

127) chain E
residue 1
type CARBOHYD
sequence I
description N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI2

128) chain B
residue 19
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

129) chain E
residue 58
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

130) chain E
residue 91
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

131) chain E
residue 94
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

132) chain B
residue 41
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

133) chain B
residue 48
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

134) chain B
residue 58
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

135) chain B
residue 91
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

136) chain B
residue 94
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

137) chain E
residue 19
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

138) chain E
residue 41
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3

139) chain E
residue 48
type CARBOHYD
sequence K
description N-linked (Glc) (glycation) lysine; in vitro => ECO:0000269|PubMed:7918443
source Swiss-Prot : SWS_FT_FI3


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