eF-site ID 4s22-D
PDB Code 4s22
Chain D

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Title Crystal structure of K29 linked di-Ubiquitin
Classification HYDROLASE
Compound Ubiquitin
Source ORGANISM_COMMON: bovine,cow,domestic cattle,domestic cow; ORGANISM_SCIENTIFIC: Bos taurus;
Sequence D:  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Description


Functional site

1) chain D
residue 16
type
sequence E
description BINDING SITE FOR RESIDUE IOD D 101
source : AC6

2) chain D
residue 46
type
sequence A
description BINDING SITE FOR RESIDUE GOL D 102
source : AC7

3) chain D
residue 48
type
sequence K
description BINDING SITE FOR RESIDUE GOL D 102
source : AC7

4) chain D
residue 74
type
sequence R
description BINDING SITE FOR RESIDUE GOL D 102
source : AC7

5) chain D
residue 54
type SITE
sequence R
description Interacts with activating enzyme
source Swiss-Prot : SWS_FT_FI1

6) chain D
residue 72
type SITE
sequence R
description Interacts with activating enzyme
source Swiss-Prot : SWS_FT_FI1

7) chain D
residue 68
type SITE
sequence H
description Essential for function
source Swiss-Prot : SWS_FT_FI2

8) chain D
residue 65
type MOD_RES
sequence S
description Phosphoserine; by PINK1 => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI3

9) chain D
residue 76
type MOD_RES
sequence G
description ADP-ribosylglycine => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI4

10) chain D
residue 76
type CROSSLNK
sequence G
description Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
source Swiss-Prot : SWS_FT_FI6

11) chain D
residue 29
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI5

12) chain D
residue 33
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI5

13) chain D
residue 48
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI5

14) chain D
residue 63
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI5

15) chain D
residue 6
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI5

16) chain D
residue 11
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI5

17) chain D
residue 27
type CROSSLNK
sequence K
description Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P62987
source Swiss-Prot : SWS_FT_FI5


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