eF-site ID 4rvy-d PDB Code 4rvy Chain d click to enlarge Title Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3) Classification OXIDOREDUCTASE Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus; Sequence d:  ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLT GTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLL LLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQF EIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFA PSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALL CAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTAN RFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLA LNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMA PQDQPHENFVFPEEVLPRGNAL Description Functional site 1) chain d residue 214 type sequence H description BINDING SITE FOR RESIDUE FE2 a 602 source : BC7 2) chain d residue 268 type sequence H description BINDING SITE FOR RESIDUE FE2 a 602 source : BC7 3) chain d residue 175 type sequence V description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 4) chain d residue 178 type sequence I description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 5) chain d residue 179 type sequence F description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 6) chain d residue 182 type sequence L description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 7) chain d residue 205 type sequence L description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 8) chain d residue 208 type sequence A description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 9) chain d residue 209 type sequence L description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 10) chain d residue 213 type sequence I description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 11) chain d residue 253 type sequence W description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 12) chain d residue 257 type sequence F description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 13) chain d residue 41 type sequence A description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 14) chain d residue 48 type sequence W description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 15) chain d residue 114 type sequence I description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 16) chain d residue 121 type sequence G description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 17) chain d residue 122 type sequence L description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 18) chain d residue 125 type sequence F description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 19) chain d residue 129 type sequence Q description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 20) chain d residue 142 type sequence N description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 21) chain d residue 146 type sequence F description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 22) chain d residue 149 type sequence P description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 23) chain d residue 153 type sequence F description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 24) chain d residue 174 type sequence G description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 25) chain d residue 275 type sequence P description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 26) chain d residue 279 type sequence L description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 27) chain d residue 232 type sequence F description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 28) chain d residue 233 type sequence R description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 29) chain d residue 317 type sequence K description BINDING SITE FOR RESIDUE CL a 610 source : CC6 30) chain d residue 214 type sequence H description BINDING SITE FOR RESIDUE BCT a 612 source : CC8 31) chain d residue 244 type sequence Y description BINDING SITE FOR RESIDUE BCT a 612 source : CC8 32) chain d residue 268 type sequence H description BINDING SITE FOR RESIDUE BCT a 612 source : CC8 33) chain d residue 39 type sequence P description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 34) chain d residue 120 type sequence F description BINDING SITE FOR RESIDUE CLA b 609 source : GC5 35) chain d residue 123 type sequence I description BINDING SITE FOR RESIDUE CLA b 609 source : GC5 36) chain d residue 126 type sequence M description BINDING SITE FOR RESIDUE CLA b 609 source : GC5 37) chain d residue 127 type sequence L description BINDING SITE FOR RESIDUE CLA b 609 source : GC5 38) chain d residue 150 type sequence I description BINDING SITE FOR RESIDUE CLA b 609 source : GC5 39) chain d residue 284 type sequence I description BINDING SITE FOR RESIDUE LMG b 619 source : HC6 40) chain d residue 149 type sequence P description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 41) chain d residue 152 type sequence V description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 42) chain d residue 155 type sequence S description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 43) chain d residue 156 type sequence V description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 44) chain d residue 181 type sequence F description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 45) chain d residue 182 type sequence L description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 46) chain d residue 185 type sequence F description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 47) chain d residue 186 type sequence Q description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 48) chain d residue 191 type sequence W description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 49) chain d residue 192 type sequence T description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 50) chain d residue 197 type sequence H description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 51) chain d residue 200 type sequence G description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 52) chain d residue 204 type sequence V description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 53) chain d residue 205 type sequence L description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 54) chain d residue 282 type sequence S description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 55) chain d residue 283 type sequence A description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 56) chain d residue 286 type sequence V description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 57) chain d residue 198 type sequence M description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 58) chain d residue 201 type sequence V description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 59) chain d residue 202 type sequence A description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 60) chain d residue 205 type sequence L description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 61) chain d residue 206 type sequence G description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 62) chain d residue 35 type sequence I description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 63) chain d residue 36 type sequence L description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 64) chain d residue 39 type sequence P description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 65) chain d residue 40 type sequence C description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 66) chain d residue 43 type sequence L description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 67) chain d residue 89 type sequence L description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 68) chain d residue 90 type sequence L description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 69) chain d residue 91 type sequence L description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 70) chain d residue 92 type sequence L description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 71) chain d residue 93 type sequence W description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 72) chain d residue 104 type sequence W description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 73) chain d residue 112 type sequence T description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 74) chain d residue 113 type sequence F description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 75) chain d residue 116 type sequence L description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 76) chain d residue 117 type sequence H description BINDING SITE FOR RESIDUE CLA d 403 source : NC9 77) chain d residue 42 type sequence Y description BINDING SITE FOR RESIDUE BCR d 404 source : OC1 78) chain d residue 43 type sequence L description BINDING SITE FOR RESIDUE BCR d 404 source : OC1 79) chain d residue 46 type sequence G description BINDING SITE FOR RESIDUE BCR d 404 source : OC1 80) chain d residue 47 type sequence G description BINDING SITE FOR RESIDUE BCR d 404 source : OC1 81) chain d residue 49 type sequence L description BINDING SITE FOR RESIDUE BCR d 404 source : OC1 82) chain d residue 50 type sequence T description BINDING SITE FOR RESIDUE BCR d 404 source : OC1 83) chain d residue 141 type sequence Y description BINDING SITE FOR RESIDUE LHG d 405 source : OC2 84) chain d residue 144 type sequence I description BINDING SITE FOR RESIDUE LHG d 405 source : OC2 85) chain d residue 266 type sequence W description BINDING SITE FOR RESIDUE LHG d 405 source : OC2 86) chain d residue 269 type sequence F description BINDING SITE FOR RESIDUE LHG d 405 source : OC2 87) chain d residue 277 type sequence T description BINDING SITE FOR RESIDUE LHG d 405 source : OC2 88) chain d residue 67 type sequence Y description BINDING SITE FOR RESIDUE LMG d 406 source : OC3 89) chain d residue 70 type sequence G description BINDING SITE FOR RESIDUE LMG d 406 source : OC3 90) chain d residue 71 type sequence C description BINDING SITE FOR RESIDUE LMG d 406 source : OC3 91) chain d residue 72 type sequence N description BINDING SITE FOR RESIDUE LMG d 406 source : OC3 92) chain d residue 73 type sequence F description BINDING SITE FOR RESIDUE LMG d 406 source : OC3 93) chain d residue 256 type sequence I description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 94) chain d residue 257 type sequence F description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 95) chain d residue 260 type sequence A description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 96) chain d residue 261 type sequence F description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 97) chain d residue 262 type sequence S description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 98) chain d residue 263 type sequence N description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 99) chain d residue 266 type sequence W description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 100) chain d residue 270 type sequence F description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 101) chain d residue 198 type sequence M description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 102) chain d residue 199 type sequence M description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 103) chain d residue 202 type sequence A description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 104) chain d residue 214 type sequence H description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 105) chain d residue 217 type sequence T description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 106) chain d residue 253 type sequence W description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 107) chain d residue 260 type sequence A description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 108) chain d residue 261 type sequence F description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 109) chain d residue 267 type sequence L description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 110) chain d residue 270 type sequence F description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 111) chain d residue 273 type sequence F description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 112) chain d residue 274 type sequence V description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 113) chain d residue 219 type sequence E description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 114) chain d residue 220 type sequence N description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 115) chain d residue 229 type sequence A description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 116) chain d residue 230 type sequence S description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 117) chain d residue 231 type sequence T description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 118) chain d residue 232 type sequence F description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 119) chain d residue 99 type sequence G description BINDING SITE FOR RESIDUE DGD d 410 source : OC7 120) chain d residue 100 type sequence D description BINDING SITE FOR RESIDUE DGD d 410 source : OC7 121) chain d residue 101 type sequence F description BINDING SITE FOR RESIDUE DGD d 410 source : OC7 122) chain d residue 102 type sequence T description BINDING SITE FOR RESIDUE DGD d 410 source : OC7 123) chain d residue 24 type sequence R description BINDING SITE FOR RESIDUE SQD d 411 source : OC8 124) chain d residue 26 type sequence R description BINDING SITE FOR RESIDUE SQD d 411 source : OC8 125) chain d residue 27 type sequence F description BINDING SITE FOR RESIDUE LHG e 101 source : PC1 126) chain d residue 87 type sequence H description BINDING SITE FOR RESIDUE DGD h 102 source : PC9 127) chain d residue 123 type sequence I description BINDING SITE FOR RESIDUE DGD h 102 source : PC9 128) chain d residue 159 type sequence I description BINDING SITE FOR RESIDUE DGD h 102 source : PC9 129) chain d residue 162 type sequence L description BINDING SITE FOR RESIDUE DGD h 102 source : PC9 130) chain d residue 291 type sequence L description BINDING SITE FOR RESIDUE DGD h 102 source : PC9 131) chain d residue 266 type sequence W description BINDING SITE FOR RESIDUE LHG l 103 source : RC2 132) chain d residue 273 type sequence F description BINDING SITE FOR RESIDUE LHG l 103 source : RC2 133) chain d residue 161-193 type TRANSMEM sequence PLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTL description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 134) chain d residue 289-352 type TRANSMEM sequence LALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAW MAPQDQPHENFVFPEEVLPRGNAL description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI2 135) chain d residue 132-140 type TOPO_DOM sequence IARLVGVRP description Cytoplasmic => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI3 136) chain d residue 218-265 type TOPO_DOM sequence VENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIF GIAFSNKR description Cytoplasmic => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI3 137) chain d residue 266-288 type TOPO_DOM sequence WLHFFMLFVPVTGLWMSAIGVVG description Lumenal source Swiss-Prot : SWS_FT_FI1 138) chain d residue 32-53 type TOPO_DOM sequence WSGILLFPCAYLALGGWLTGTT description Lumenal source Swiss-Prot : SWS_FT_FI1 139) chain d residue 109-131 type TOPO_DOM sequence GLWTFIALHGAFGLIGFMLRQFE description Lumenal source Swiss-Prot : SWS_FT_FI1 140) chain d residue 141-160 type TOPO_DOM sequence YNAIAFSAPIAVFVSVFLIY description Lumenal source Swiss-Prot : SWS_FT_FI1 141) chain d residue 194-217 type TOPO_DOM sequence NPFHMMGVAGVLGGALLCAIHGAT description Lumenal source Swiss-Prot : SWS_FT_FI1 142) chain d residue 268 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI10 143) chain d residue 142 type BINDING sequence N description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI6 144) chain d residue 197 type BINDING sequence H description axial binding residue => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI7 145) chain d residue 214 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 146) chain d residue 261 type BINDING sequence F description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25006873, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI9

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