eF-site ID 4rvy-a PDB Code 4rvy Chain a click to enlarge Title Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3) Classification OXIDOREDUCTASE Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus; Sequence a:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFAALGI STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV MHERNAHNFPLDLA Description Functional site 1) chain a residue 170 type sequence D description BINDING SITE FOR RESIDUE OEX a 601 source : BC6 2) chain a residue 185 type sequence V description BINDING SITE FOR RESIDUE OEX a 601 source : BC6 3) chain a residue 189 type sequence E description BINDING SITE FOR RESIDUE OEX a 601 source : BC6 4) chain a residue 332 type sequence H description BINDING SITE FOR RESIDUE OEX a 601 source : BC6 5) chain a residue 333 type sequence E description BINDING SITE FOR RESIDUE OEX a 601 source : BC6 6) chain a residue 337 type sequence H description BINDING SITE FOR RESIDUE OEX a 601 source : BC6 7) chain a residue 342 type sequence D description BINDING SITE FOR RESIDUE OEX a 601 source : BC6 8) chain a residue 344 type sequence A description BINDING SITE FOR RESIDUE OEX a 601 source : BC6 9) chain a residue 215 type sequence H description BINDING SITE FOR RESIDUE FE2 a 602 source : BC7 10) chain a residue 272 type sequence H description BINDING SITE FOR RESIDUE FE2 a 602 source : BC7 11) chain a residue 147 type sequence Y description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 12) chain a residue 150 type sequence P description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 13) chain a residue 153 type sequence S description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 14) chain a residue 157 type sequence V description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 15) chain a residue 183 type sequence M description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 16) chain a residue 186 type sequence F description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 17) chain a residue 187 type sequence Q description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 18) chain a residue 192 type sequence I description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 19) chain a residue 198 type sequence H description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 20) chain a residue 201 type sequence G description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 21) chain a residue 206 type sequence F description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 22) chain a residue 286 type sequence A description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 23) chain a residue 287 type sequence A description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 24) chain a residue 290 type sequence I description BINDING SITE FOR RESIDUE CLA a 603 source : BC8 25) chain a residue 199 type sequence Q description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 26) chain a residue 202 type sequence V description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 27) chain a residue 203 type sequence A description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 28) chain a residue 206 type sequence F description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 29) chain a residue 207 type sequence G description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 30) chain a residue 210 type sequence L description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 31) chain a residue 278 type sequence W description BINDING SITE FOR RESIDUE CLA a 604 source : BC9 32) chain a residue 41 type sequence L description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 33) chain a residue 44 type sequence A description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 34) chain a residue 45 type sequence T description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 35) chain a residue 48 type sequence F description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 36) chain a residue 126 type sequence Y description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 37) chain a residue 130 type sequence Q description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 38) chain a residue 146 type sequence A description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 39) chain a residue 147 type sequence Y description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 40) chain a residue 150 type sequence P description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 41) chain a residue 175 type sequence G description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 42) chain a residue 279 type sequence P description BINDING SITE FOR RESIDUE PHO a 605 source : CC1 43) chain a residue 206 type sequence F description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 44) chain a residue 209 type sequence A description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 45) chain a residue 210 type sequence L description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 46) chain a residue 214 type sequence M description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 47) chain a residue 258 type sequence L description BINDING SITE FOR RESIDUE PHO a 606 source : CC2 48) chain a residue 36 type sequence I description BINDING SITE FOR RESIDUE CLA a 607 source : CC3 49) chain a residue 40 type sequence T description BINDING SITE FOR RESIDUE CLA a 607 source : CC3 50) chain a residue 93 type sequence F description BINDING SITE FOR RESIDUE CLA a 607 source : CC3 51) chain a residue 95 type sequence P description BINDING SITE FOR RESIDUE CLA a 607 source : CC3 52) chain a residue 96 type sequence I description BINDING SITE FOR RESIDUE CLA a 607 source : CC3 53) chain a residue 97 type sequence W description BINDING SITE FOR RESIDUE CLA a 607 source : CC3 54) chain a residue 114 type sequence L description BINDING SITE FOR RESIDUE CLA a 607 source : CC3 55) chain a residue 118 type sequence H description BINDING SITE FOR RESIDUE CLA a 607 source : CC3 56) chain a residue 43 type sequence A description BINDING SITE FOR RESIDUE BCR a 608 source : CC4 57) chain a residue 96 type sequence I description BINDING SITE FOR RESIDUE BCR a 608 source : CC4 58) chain a residue 200 type sequence L description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 59) chain a residue 204 type sequence G description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 60) chain a residue 267 type sequence N description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 61) chain a residue 270 type sequence S description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 62) chain a residue 273 type sequence F description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 63) chain a residue 274 type sequence F description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 64) chain a residue 278 type sequence W description BINDING SITE FOR RESIDUE SQD a 609 source : CC5 65) chain a residue 181 type sequence N description BINDING SITE FOR RESIDUE CL a 610 source : CC6 66) chain a residue 332 type sequence H description BINDING SITE FOR RESIDUE CL a 610 source : CC6 67) chain a residue 333 type sequence E description BINDING SITE FOR RESIDUE CL a 610 source : CC6 68) chain a residue 338 type sequence N description BINDING SITE FOR RESIDUE CL a 611 source : CC7 69) chain a residue 339 type sequence F description BINDING SITE FOR RESIDUE CL a 611 source : CC7 70) chain a residue 215 type sequence H description BINDING SITE FOR RESIDUE BCT a 612 source : CC8 71) chain a residue 244 type sequence E description BINDING SITE FOR RESIDUE BCT a 612 source : CC8 72) chain a residue 246 type sequence Y description BINDING SITE FOR RESIDUE BCT a 612 source : CC8 73) chain a residue 272 type sequence H description BINDING SITE FOR RESIDUE BCT a 612 source : CC8 74) chain a residue 211 type sequence F description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 75) chain a residue 214 type sequence M description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 76) chain a residue 215 type sequence H description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 77) chain a residue 218 type sequence L description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 78) chain a residue 252 type sequence H description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 79) chain a residue 255 type sequence F description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 80) chain a residue 264 type sequence S description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 81) chain a residue 265 type sequence F description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 82) chain a residue 271 type sequence L description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 83) chain a residue 274 type sequence F description BINDING SITE FOR RESIDUE PL9 a 613 source : CC9 84) chain a residue 93 type sequence F description BINDING SITE FOR RESIDUE LMG a 614 source : DC1 85) chain a residue 97 type sequence W description BINDING SITE FOR RESIDUE LMG a 614 source : DC1 86) chain a residue 98 type sequence E description BINDING SITE FOR RESIDUE LMG a 614 source : DC1 87) chain a residue 121 type sequence L description BINDING SITE FOR RESIDUE LMG a 614 source : DC1 88) chain a residue 124 type sequence S description BINDING SITE FOR RESIDUE LMG a 614 source : DC1 89) chain a residue 155 type sequence F description BINDING SITE FOR RESIDUE LMG a 614 source : DC1 90) chain a residue 20 type sequence W description BINDING SITE FOR RESIDUE SQD B 601 source : DC2 91) chain a residue 26 type sequence N description BINDING SITE FOR RESIDUE SQD B 601 source : DC2 92) chain a residue 27 type sequence R description BINDING SITE FOR RESIDUE SQD B 601 source : DC2 93) chain a residue 28 type sequence L description BINDING SITE FOR RESIDUE SQD B 601 source : DC2 94) chain a residue 38 type sequence I description BINDING SITE FOR RESIDUE SQD B 601 source : DC2 95) chain a residue 45 type sequence T description BINDING SITE FOR RESIDUE SQD B 601 source : DC2 96) chain a residue 28 type sequence L description BINDING SITE FOR RESIDUE BCR B 622 source : FC5 97) chain a residue 33 type sequence F description BINDING SITE FOR RESIDUE CLA c 505 source : KC7 98) chain a residue 127 type sequence M description BINDING SITE FOR RESIDUE CLA c 505 source : KC7 99) chain a residue 128 type sequence G description BINDING SITE FOR RESIDUE CLA c 505 source : KC7 100) chain a residue 131 type sequence W description BINDING SITE FOR RESIDUE CLA c 505 source : KC7 101) chain a residue 91 type sequence L description BINDING SITE FOR RESIDUE DGD c 516 source : LC9 102) chain a residue 163 type sequence I description BINDING SITE FOR RESIDUE DGD c 516 source : LC9 103) chain a residue 195 type sequence H description BINDING SITE FOR RESIDUE DGD c 517 source : MC1 104) chain a residue 197 type sequence F description BINDING SITE FOR RESIDUE DGD c 517 source : MC1 105) chain a residue 297 type sequence L description BINDING SITE FOR RESIDUE DGD c 517 source : MC1 106) chain a residue 199 type sequence Q description BINDING SITE FOR RESIDUE DGD c 518 source : MC2 107) chain a residue 300 type sequence F description BINDING SITE FOR RESIDUE DGD c 518 source : MC2 108) chain a residue 301 type sequence N description BINDING SITE FOR RESIDUE DGD c 518 source : MC2 109) chain a residue 302 type sequence F description BINDING SITE FOR RESIDUE DGD c 518 source : MC2 110) chain a residue 305 type sequence S description BINDING SITE FOR RESIDUE DGD c 518 source : MC2 111) chain a residue 183 type sequence M description BINDING SITE FOR RESIDUE CLA d 401 source : NC7 112) chain a residue 157 type sequence V description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 113) chain a residue 172 type sequence M description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 114) chain a residue 176 type sequence I description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 115) chain a residue 179 type sequence T description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 116) chain a residue 180 type sequence F description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 117) chain a residue 183 type sequence M description BINDING SITE FOR RESIDUE CLA d 402 source : NC8 118) chain a residue 232 type sequence S description BINDING SITE FOR RESIDUE LHG d 405 source : OC2 119) chain a residue 234 type sequence N description BINDING SITE FOR RESIDUE LHG d 405 source : OC2 120) chain a residue 37 type sequence M description BINDING SITE FOR RESIDUE LHG d 407 source : OC4 121) chain a residue 77 type sequence I description BINDING SITE FOR RESIDUE PL9 d 408 source : OC5 122) chain a residue 140 type sequence R description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 123) chain a residue 142 type sequence W description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 124) chain a residue 273 type sequence F description BINDING SITE FOR RESIDUE LHG d 409 source : OC6 125) chain a residue 258 type sequence L description BINDING SITE FOR RESIDUE LHG e 101 source : PC1 126) chain a residue 260 type sequence F description BINDING SITE FOR RESIDUE LHG e 101 source : PC1 127) chain a residue 262 type sequence Y description BINDING SITE FOR RESIDUE LHG e 101 source : PC1 128) chain a residue 232 type sequence S description BINDING SITE FOR RESIDUE LHG l 103 source : RC2 129) chain a residue 234 type sequence N description BINDING SITE FOR RESIDUE LHG l 103 source : RC2 130) chain a residue 215 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 131) chain a residue 272 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 132) chain a residue 126 type MOD_RES sequence Y description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 133) chain a residue 170 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 134) chain a residue 189 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 135) chain a residue 332 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 136) chain a residue 333 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 137) chain a residue 118 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 138) chain a residue 198 type TOPO_DOM sequence H description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ source Swiss-Prot : SWS_FT_FI4 139) chain a residue 344 type BINDING sequence A description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI11 140) chain a residue 344 type SITE sequence A description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI14 141) chain a residue 161 type SITE sequence Y description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI12 142) chain a residue 190 type SITE sequence H description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI13

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