eF-site ID 4rvy-A PDB Code 4rvy Chain A click to enlarge Title Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3) Classification OXIDOREDUCTASE Compound Photosystem II protein D1 1 Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus; Sequence A:  ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVI AFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIG LHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQ WELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSD GMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGAL FCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVA AHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFAALGI STMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEV MHERNAHNFPLDLA Description Functional site 1) chain A residue 170 type sequence D description BINDING SITE FOR RESIDUE OEX A 601 source : AC1 2) chain A residue 185 type sequence V description BINDING SITE FOR RESIDUE OEX A 601 source : AC1 3) chain A residue 189 type sequence E description BINDING SITE FOR RESIDUE OEX A 601 source : AC1 4) chain A residue 332 type sequence H description BINDING SITE FOR RESIDUE OEX A 601 source : AC1 5) chain A residue 333 type sequence E description BINDING SITE FOR RESIDUE OEX A 601 source : AC1 6) chain A residue 337 type sequence H description BINDING SITE FOR RESIDUE OEX A 601 source : AC1 7) chain A residue 342 type sequence D description BINDING SITE FOR RESIDUE OEX A 601 source : AC1 8) chain A residue 344 type sequence A description BINDING SITE FOR RESIDUE OEX A 601 source : AC1 9) chain A residue 215 type sequence H description BINDING SITE FOR RESIDUE FE2 A 602 source : AC2 10) chain A residue 272 type sequence H description BINDING SITE FOR RESIDUE FE2 A 602 source : AC2 11) chain A residue 147 type sequence Y description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 12) chain A residue 150 type sequence P description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 13) chain A residue 153 type sequence S description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 14) chain A residue 157 type sequence V description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 15) chain A residue 183 type sequence M description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 16) chain A residue 186 type sequence F description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 17) chain A residue 187 type sequence Q description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 18) chain A residue 192 type sequence I description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 19) chain A residue 198 type sequence H description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 20) chain A residue 201 type sequence G description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 21) chain A residue 206 type sequence F description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 22) chain A residue 286 type sequence A description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 23) chain A residue 287 type sequence A description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 24) chain A residue 290 type sequence I description BINDING SITE FOR RESIDUE CLA A 603 source : AC3 25) chain A residue 199 type sequence Q description BINDING SITE FOR RESIDUE CLA A 604 source : AC4 26) chain A residue 202 type sequence V description BINDING SITE FOR RESIDUE CLA A 604 source : AC4 27) chain A residue 203 type sequence A description BINDING SITE FOR RESIDUE CLA A 604 source : AC4 28) chain A residue 206 type sequence F description BINDING SITE FOR RESIDUE CLA A 604 source : AC4 29) chain A residue 207 type sequence G description BINDING SITE FOR RESIDUE CLA A 604 source : AC4 30) chain A residue 210 type sequence L description BINDING SITE FOR RESIDUE CLA A 604 source : AC4 31) chain A residue 278 type sequence W description BINDING SITE FOR RESIDUE CLA A 604 source : AC4 32) chain A residue 41 type sequence L description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 33) chain A residue 44 type sequence A description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 34) chain A residue 45 type sequence T description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 35) chain A residue 48 type sequence F description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 36) chain A residue 126 type sequence Y description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 37) chain A residue 130 type sequence Q description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 38) chain A residue 146 type sequence A description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 39) chain A residue 147 type sequence Y description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 40) chain A residue 150 type sequence P description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 41) chain A residue 175 type sequence G description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 42) chain A residue 279 type sequence P description BINDING SITE FOR RESIDUE PHO A 605 source : AC5 43) chain A residue 206 type sequence F description BINDING SITE FOR RESIDUE PHO A 606 source : AC6 44) chain A residue 209 type sequence A description BINDING SITE FOR RESIDUE PHO A 606 source : AC6 45) chain A residue 210 type sequence L description BINDING SITE FOR RESIDUE PHO A 606 source : AC6 46) chain A residue 214 type sequence M description BINDING SITE FOR RESIDUE PHO A 606 source : AC6 47) chain A residue 258 type sequence L description BINDING SITE FOR RESIDUE PHO A 606 source : AC6 48) chain A residue 36 type sequence I description BINDING SITE FOR RESIDUE CLA A 607 source : AC7 49) chain A residue 40 type sequence T description BINDING SITE FOR RESIDUE CLA A 607 source : AC7 50) chain A residue 93 type sequence F description BINDING SITE FOR RESIDUE CLA A 607 source : AC7 51) chain A residue 95 type sequence P description BINDING SITE FOR RESIDUE CLA A 607 source : AC7 52) chain A residue 96 type sequence I description BINDING SITE FOR RESIDUE CLA A 607 source : AC7 53) chain A residue 97 type sequence W description BINDING SITE FOR RESIDUE CLA A 607 source : AC7 54) chain A residue 114 type sequence L description BINDING SITE FOR RESIDUE CLA A 607 source : AC7 55) chain A residue 118 type sequence H description BINDING SITE FOR RESIDUE CLA A 607 source : AC7 56) chain A residue 43 type sequence A description BINDING SITE FOR RESIDUE BCR A 608 source : AC8 57) chain A residue 96 type sequence I description BINDING SITE FOR RESIDUE BCR A 608 source : AC8 58) chain A residue 200 type sequence L description BINDING SITE FOR RESIDUE SQD A 609 source : AC9 59) chain A residue 204 type sequence G description BINDING SITE FOR RESIDUE SQD A 609 source : AC9 60) chain A residue 267 type sequence N description BINDING SITE FOR RESIDUE SQD A 609 source : AC9 61) chain A residue 270 type sequence S description BINDING SITE FOR RESIDUE SQD A 609 source : AC9 62) chain A residue 273 type sequence F description BINDING SITE FOR RESIDUE SQD A 609 source : AC9 63) chain A residue 274 type sequence F description BINDING SITE FOR RESIDUE SQD A 609 source : AC9 64) chain A residue 278 type sequence W description BINDING SITE FOR RESIDUE SQD A 609 source : AC9 65) chain A residue 181 type sequence N description BINDING SITE FOR RESIDUE CL A 610 source : BC1 66) chain A residue 332 type sequence H description BINDING SITE FOR RESIDUE CL A 610 source : BC1 67) chain A residue 333 type sequence E description BINDING SITE FOR RESIDUE CL A 610 source : BC1 68) chain A residue 338 type sequence N description BINDING SITE FOR RESIDUE CL A 611 source : BC2 69) chain A residue 339 type sequence F description BINDING SITE FOR RESIDUE CL A 611 source : BC2 70) chain A residue 215 type sequence H description BINDING SITE FOR RESIDUE BCT A 612 source : BC3 71) chain A residue 244 type sequence E description BINDING SITE FOR RESIDUE BCT A 612 source : BC3 72) chain A residue 246 type sequence Y description BINDING SITE FOR RESIDUE BCT A 612 source : BC3 73) chain A residue 272 type sequence H description BINDING SITE FOR RESIDUE BCT A 612 source : BC3 74) chain A residue 211 type sequence F description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 75) chain A residue 214 type sequence M description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 76) chain A residue 215 type sequence H description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 77) chain A residue 218 type sequence L description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 78) chain A residue 252 type sequence H description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 79) chain A residue 255 type sequence F description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 80) chain A residue 264 type sequence S description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 81) chain A residue 265 type sequence F description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 82) chain A residue 271 type sequence L description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 83) chain A residue 274 type sequence F description BINDING SITE FOR RESIDUE PL9 A 613 source : BC4 84) chain A residue 93 type sequence F description BINDING SITE FOR RESIDUE LMG A 614 source : BC5 85) chain A residue 97 type sequence W description BINDING SITE FOR RESIDUE LMG A 614 source : BC5 86) chain A residue 98 type sequence E description BINDING SITE FOR RESIDUE LMG A 614 source : BC5 87) chain A residue 121 type sequence L description BINDING SITE FOR RESIDUE LMG A 614 source : BC5 88) chain A residue 124 type sequence S description BINDING SITE FOR RESIDUE LMG A 614 source : BC5 89) chain A residue 155 type sequence F description BINDING SITE FOR RESIDUE LMG A 614 source : BC5 90) chain A residue 20 type sequence W description BINDING SITE FOR RESIDUE SQD b 601 source : FC6 91) chain A residue 26 type sequence N description BINDING SITE FOR RESIDUE SQD b 601 source : FC6 92) chain A residue 27 type sequence R description BINDING SITE FOR RESIDUE SQD b 601 source : FC6 93) chain A residue 28 type sequence L description BINDING SITE FOR RESIDUE SQD b 601 source : FC6 94) chain A residue 38 type sequence I description BINDING SITE FOR RESIDUE SQD b 601 source : FC6 95) chain A residue 45 type sequence T description BINDING SITE FOR RESIDUE SQD b 601 source : FC6 96) chain A residue 28 type sequence L description BINDING SITE FOR RESIDUE BCR b 622 source : HC9 97) chain A residue 33 type sequence F description BINDING SITE FOR RESIDUE CLA C 505 source : IC5 98) chain A residue 127 type sequence M description BINDING SITE FOR RESIDUE CLA C 505 source : IC5 99) chain A residue 128 type sequence G description BINDING SITE FOR RESIDUE CLA C 505 source : IC5 100) chain A residue 131 type sequence W description BINDING SITE FOR RESIDUE CLA C 505 source : IC5 101) chain A residue 91 type sequence L description BINDING SITE FOR RESIDUE DGD C 516 source : JC7 102) chain A residue 163 type sequence I description BINDING SITE FOR RESIDUE DGD C 516 source : JC7 103) chain A residue 195 type sequence H description BINDING SITE FOR RESIDUE DGD C 517 source : JC8 104) chain A residue 197 type sequence F description BINDING SITE FOR RESIDUE DGD C 517 source : JC8 105) chain A residue 297 type sequence L description BINDING SITE FOR RESIDUE DGD C 517 source : JC8 106) chain A residue 199 type sequence Q description BINDING SITE FOR RESIDUE DGD C 518 source : JC9 107) chain A residue 300 type sequence F description BINDING SITE FOR RESIDUE DGD C 518 source : JC9 108) chain A residue 301 type sequence N description BINDING SITE FOR RESIDUE DGD C 518 source : JC9 109) chain A residue 302 type sequence F description BINDING SITE FOR RESIDUE DGD C 518 source : JC9 110) chain A residue 305 type sequence S description BINDING SITE FOR RESIDUE DGD C 518 source : JC9 111) chain A residue 183 type sequence M description BINDING SITE FOR RESIDUE CLA D 401 source : MC5 112) chain A residue 157 type sequence V description BINDING SITE FOR RESIDUE CLA D 402 source : MC6 113) chain A residue 172 type sequence M description BINDING SITE FOR RESIDUE CLA D 402 source : MC6 114) chain A residue 176 type sequence I description BINDING SITE FOR RESIDUE CLA D 402 source : MC6 115) chain A residue 179 type sequence T description BINDING SITE FOR RESIDUE CLA D 402 source : MC6 116) chain A residue 180 type sequence F description BINDING SITE FOR RESIDUE CLA D 402 source : MC6 117) chain A residue 183 type sequence M description BINDING SITE FOR RESIDUE CLA D 402 source : MC6 118) chain A residue 232 type sequence S description BINDING SITE FOR RESIDUE LHG D 405 source : MC9 119) chain A residue 234 type sequence N description BINDING SITE FOR RESIDUE LHG D 405 source : MC9 120) chain A residue 37 type sequence M description BINDING SITE FOR RESIDUE LHG D 407 source : NC2 121) chain A residue 77 type sequence I description BINDING SITE FOR RESIDUE PL9 D 408 source : NC3 122) chain A residue 140 type sequence R description BINDING SITE FOR RESIDUE LHG D 409 source : NC4 123) chain A residue 142 type sequence W description BINDING SITE FOR RESIDUE LHG D 409 source : NC4 124) chain A residue 273 type sequence F description BINDING SITE FOR RESIDUE LHG D 409 source : NC4 125) chain A residue 258 type sequence L description BINDING SITE FOR RESIDUE LHG E 101 source : OC9 126) chain A residue 260 type sequence F description BINDING SITE FOR RESIDUE LHG E 101 source : OC9 127) chain A residue 262 type sequence Y description BINDING SITE FOR RESIDUE LHG E 101 source : OC9 128) chain A residue 232 type sequence S description BINDING SITE FOR RESIDUE LHG L 102 source : QC8 129) chain A residue 234 type sequence N description BINDING SITE FOR RESIDUE LHG L 102 source : QC8 130) chain A residue 191-217 type prosite sequence NILMHPFHQLGVAGVFGGALFCAMHGS description REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagvlggallcAiHGA source prosite : PS00244 131) chain A residue 272 type MOD_RES sequence H description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739 source Swiss-Prot : SWS_FT_FI5 132) chain A residue 332 type BINDING sequence H description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 133) chain A residue 333 type BINDING sequence E description BINDING => ECO:0000255|HAMAP-Rule:MF_01383, ECO:0000269|PubMed:16355230, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:22665786, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI8 134) chain A residue 344 type BINDING sequence A description BINDING => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000269|PubMed:19219048, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:16355230, ECO:0000303|PubMed:20558739, ECO:0000303|PubMed:21367867, ECO:0000303|PubMed:23413188, ECO:0000303|PubMed:25043005 source Swiss-Prot : SWS_FT_FI11 135) chain A residue 344 type SITE sequence A description Cleavage; by CtpA => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI14 136) chain A residue 161 type SITE sequence Y description Tyrosine radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379, ECO:0000303|PubMed:11217865, ECO:0000303|PubMed:14764885, ECO:0000303|PubMed:19219048, ECO:0000303|PubMed:21367867, ECO:0000303|DOI:10.1039/B406989G source Swiss-Prot : SWS_FT_FI12 137) chain A residue 190 type SITE sequence H description Stabilizes free radical intermediate => ECO:0000255|HAMAP-Rule:MF_01379 source Swiss-Prot : SWS_FT_FI13

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