eF-site ID 4rvy-z
PDB Code 4rvy
Chain z

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Title Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)
Classification OXIDOREDUCTASE
Compound Photosystem II protein D1 1
Source ORGANISM_SCIENTIFIC: Thermosynechococcus elongatus;
Sequence z:  MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLI
FLGSGLWIALVLVVGVLNFFVV
Description


Functional site

1) chain z
residue 20
type
sequence V
description BINDING SITE FOR RESIDUE CLA c 511
source : LC4

2) chain z
residue 23
type
sequence V
description BINDING SITE FOR RESIDUE CLA c 511
source : LC4

3) chain z
residue 28
type
sequence A
description BINDING SITE FOR RESIDUE CLA c 511
source : LC4

4) chain z
residue 51
type
sequence V
description BINDING SITE FOR RESIDUE BCR c 514
source : LC7

5) chain z
residue 55
type
sequence G
description BINDING SITE FOR RESIDUE BCR c 514
source : LC7

6) chain z
residue 59
type
sequence F
description BINDING SITE FOR RESIDUE LMG c 520
source : MC4

7) chain z
residue 62
type
sequence V
description BINDING SITE FOR RESIDUE LMG c 520
source : MC4

8) chain z
residue 17
type
sequence F
description BINDING SITE FOR RESIDUE BCR k 101
source : QC5

9) chain z
residue 16
type
sequence S
description BINDING SITE FOR RESIDUE BCR k 102
source : QC6

10) chain z
residue 27
type
sequence Y
description BINDING SITE FOR RESIDUE LMG z 101
source : SC2

11) chain z
residue 33
type
sequence W
description BINDING SITE FOR RESIDUE LMG z 101
source : SC2

12) chain z
residue 37
type
sequence K
description BINDING SITE FOR RESIDUE LMG z 101
source : SC2

13) chain z
residue 41
type
sequence F
description BINDING SITE FOR RESIDUE LMG z 101
source : SC2

14) chain z
residue 47
type
sequence W
description BINDING SITE FOR RESIDUE LMG z 101
source : SC2

15) chain z
residue 1
type MOD_RES
sequence M
description N-formylmethionine => ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739
source Swiss-Prot : SWS_FT_FI5

16) chain z
residue 1-4
type TOPO_DOM
sequence MTIL
description Lumenal
source Swiss-Prot : SWS_FT_FI1

17) chain z
residue 5-25
type TRANSMEM
sequence FQLALAALVILSFVMVIGVPV
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

18) chain z
residue 37-58
type TRANSMEM
sequence KQLIFLGSGLWIALVLVVGVLN
description Helical => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI2

19) chain z
residue 26-36
type TOPO_DOM
sequence AYASPQDWDRS
description Cytoplasmic => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI3

20) chain z
residue 59-62
type TOPO_DOM
sequence FFVV
description Lumenal => ECO:0000269|PubMed:33846594, ECO:0007744|PDB:7NHQ
source Swiss-Prot : SWS_FT_FI4


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