eF-site ID 4qbz-AB
PDB Code 4qbz
Chain A, B

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Title Crystal structure of human TLR8 in complex with DS-802
Classification RNA BINDING PROTEIN
Compound Toll-like receptor 8
Source (TLR8_HUMAN)
Sequence A:  SRSYPCDEKKQNDSVIAECSNRRLQEVPQTVGKYVTELDL
SDNFITHITNESFQGLQNLTKINLNHNPNVGLNITDGAFL
NLKNLRELLLEDNQLPQIPSGLPESLTELSLIQNNIYNIT
KEGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTN
LELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEEDF
KGLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFA
FQNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNY
LVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRN
FSKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLG
INFIKQIDFKLFQNFSNLEIIYLSENRISPLVTDFEFDPH
SNFYHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENL
PDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDF
DNASALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFT
NLKVLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILW
NDDDNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPA
SLTELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLT
DSLSDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLS
SNLLKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFR
RWMDEHLNVKIPRLVDVICASPGDQRGKSIVSLE
B:  SRSYPCDEKKQVIAECSNRRLQEVPQTVGKYVTELDLSDN
FITHITNESFQGLQNLTKINLNHNPNVQNGLNITDGAFLN
LKNLRELLLEDNQLPQIPSGLPESLTELSLIQNNIYNITK
EGISRLINLKNLYLAWNCYFNKVCEKTNIEDGVFETLTNL
ELLSLSFNSLSHVPPKLPSSLRKLFLSNTQIKYISEEDFK
GLINLTLLDLSGNCPRCFNAPFPCVPCDGGASINIDRFAF
QNLTQLRYLNLSSTSLRKINAAWFKNMPHLKVLDLEFNYL
VGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNF
SKLLSLRALHLRGYVFQELREDDFQPLMQLPNLSTINLGI
NFIKQIDFKLFQNFSNLEIIYLSENRISPLVFEFDPHSNF
YHFTRPLIKPQCAAYGKALDLSLNSIFFIGPNQFENLPDI
ACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNA
SALTELSDLEVLDLSYNSHYFRIAGVTHHLEFIQNFTNLK
VLNLSHNNIYTLTDKYNLESKSLVELVFSGNRLDILWNDD
DNRYISIFKGLKNLTRLDLSLNRLKHIPNEAFLNLPASLT
ELHINDNMLKFFNWTLLQQFPRLELLDLRGNKLLFLTDSL
SDFTSSLRTLLLSHNRISHLPSGFLSEVSSLKHLDLSSNL
LKTINKSALETKTTTKLSMLELHGNPFECTCDIGDFRRWM
DEHLNVKIPRLVDVICASPGDQRGKSIVSLE
Description (1)  Toll-like receptor 8


Functional site

1) chain A
residue 582
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

2) chain A
residue 752
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

3) chain B
residue 115
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

4) chain B
residue 160
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

5) chain B
residue 247
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

6) chain B
residue 285
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

7) chain B
residue 358
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

8) chain A
residue 42
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

9) chain B
residue 362
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

10) chain B
residue 416
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

11) chain B
residue 582
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

12) chain B
residue 752
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

13) chain A
residue 115
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

14) chain A
residue 160
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

15) chain A
residue 247
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

16) chain A
residue 285
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

17) chain A
residue 358
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

18) chain A
residue 362
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

19) chain A
residue 416
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000255
source Swiss-Prot : SWS_FT_FI2

20) chain A
residue 80
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218
source Swiss-Prot : SWS_FT_FI3

21) chain A
residue 88
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218
source Swiss-Prot : SWS_FT_FI3

22) chain B
residue 80
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218
source Swiss-Prot : SWS_FT_FI3

23) chain B
residue 88
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:19159218
source Swiss-Prot : SWS_FT_FI3

24) chain A
residue 293
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

25) chain B
residue 511
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

26) chain B
residue 546
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

27) chain B
residue 590
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

28) chain B
residue 640
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

29) chain B
residue 680
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

30) chain A
residue 395
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

31) chain A
residue 511
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

32) chain A
residue 546
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

33) chain A
residue 590
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

34) chain A
residue 640
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

35) chain A
residue 680
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

36) chain B
residue 293
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4

37) chain B
residue 395
type CARBOHYD
sequence N
description N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:23520111
source Swiss-Prot : SWS_FT_FI4


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