eF-site ID 4q4z-C
PDB Code 4q4z
Chain C

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Title Thermus thermophilus RNA polymerase de novo transcription initiation complex
Classification transcription/DNA
Compound DNA-directed RNA polymerase subunit alpha
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence C:  MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRE
NVGIQAAFRETFPIEEGLVLDFLEYRLGEPPFPQDECREK
DLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGS
FIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLP
KRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQET
LARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGD
PPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLS
GRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDID
HLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDS
LTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRH
KRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEG
ANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYM
TATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSP
EEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQT
QAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKV
DGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVG
QRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFED
AIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDI
PHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESE
PTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRL
RRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNK
GVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQIL
ETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYF
GKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKEL
FLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMH
ARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAA
HTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFR
VLVKELQALALDVQTLDEKDNPVDIFEGLASK
Description


Functional site

1) chain C
residue 567
type
sequence Q
description BINDING SITE FOR RESIDUE ATP C 1201
source : AC1

2) chain C
residue 838
type
sequence K
description BINDING SITE FOR RESIDUE ATP C 1201
source : AC1

3) chain C
residue 999
type
sequence H
description BINDING SITE FOR RESIDUE ATP C 1201
source : AC1

4) chain C
residue 557
type
sequence R
description BINDING SITE FOR RESIDUE 2TM D 2006
source : AC7

5) chain C
residue 879
type
sequence R
description BINDING SITE FOR RESIDUE 2TM D 2006
source : AC7

6) chain C
residue 836-848
type prosite
sequence GDKLANRHGNKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
source prosite : PS01166


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