eF-site ID 4q4z-D PDB Code 4q4z Chain D click to enlarge Title Thermus thermophilus RNA polymerase de novo transcription initiation complex Classification transcription/DNA Compound DNA-directed RNA polymerase subunit alpha Source ORGANISM_SCIENTIFIC: Thermus thermophilus; Sequence D:  KEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERD GLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTK SIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATE LEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELR YGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGV ALYRFPRRVRVEYVKKERAGLRLPLAAWVEKEAYKPGEIL AELPEPYLFRAEEEGVVELKELEEGAFLVLRREDEPVATY FLPVGMTPLVVHGEIVEKGQPLAEAKGLLRMPRQVRAAQV EAEEEGETVYLTLFLEWTEPKDYRVQPHMNVVVPEGARVE AGDKIVAAIDPEEEVIAEAEGVVHLHEPASILVVKARVYP FEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRN VVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMK HPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPP DLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGA PEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRS LTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQC GLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRD IKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVE GQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQ MLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGA GLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYV FANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILF ARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRL GMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQ YLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEK VTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLR GLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGA DTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPL FQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEE GRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQ KCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFH TGGITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEE KLSVFVESEGFSKEYKLPKEARLLVKDGDYVEAGQPLTRG AIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHI EIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLI AEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLT EAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVD QKTLKAIEEARKEA Description Functional site 1) chain D residue 704 type sequence R description BINDING SITE FOR RESIDUE ATP C 1201 source : AC1 2) chain D residue 743 type sequence D description BINDING SITE FOR RESIDUE ATP C 1201 source : AC1 3) chain D residue 1112 type sequence C description BINDING SITE FOR RESIDUE ZN D 2001 source : AC2 4) chain D residue 1194 type sequence C description BINDING SITE FOR RESIDUE ZN D 2001 source : AC2 5) chain D residue 1201 type sequence C description BINDING SITE FOR RESIDUE ZN D 2001 source : AC2 6) chain D residue 1204 type sequence C description BINDING SITE FOR RESIDUE ZN D 2001 source : AC2 7) chain D residue 58 type sequence C description BINDING SITE FOR RESIDUE ZN D 2002 source : AC3 8) chain D residue 60 type sequence C description BINDING SITE FOR RESIDUE ZN D 2002 source : AC3 9) chain D residue 73 type sequence C description BINDING SITE FOR RESIDUE ZN D 2002 source : AC3 10) chain D residue 76 type sequence C description BINDING SITE FOR RESIDUE ZN D 2002 source : AC3 11) chain D residue 739 type sequence D description BINDING SITE FOR RESIDUE MG D 2003 source : AC4 12) chain D residue 741 type sequence D description BINDING SITE FOR RESIDUE MG D 2003 source : AC4 13) chain D residue 743 type sequence D description BINDING SITE FOR RESIDUE MG D 2003 source : AC4 14) chain D residue 739 type sequence D description BINDING SITE FOR RESIDUE MG D 2004 source : AC5 15) chain D residue 840 type sequence K description BINDING SITE FOR RESIDUE MG D 2005 source : AC6 16) chain D residue 704 type sequence R description BINDING SITE FOR RESIDUE 2TM D 2006 source : AC7 17) chain D residue 706 type sequence P description BINDING SITE FOR RESIDUE 2TM D 2006 source : AC7 18) chain D residue 737 type sequence N description BINDING SITE FOR RESIDUE 2TM D 2006 source : AC7 19) chain D residue 1029 type sequence R description BINDING SITE FOR RESIDUE 2TM D 2006 source : AC7 20) chain D residue 1235 type sequence Q description BINDING SITE FOR RESIDUE 2TM D 2006 source : AC7 21) chain D residue 1238 type sequence M description BINDING SITE FOR RESIDUE 2TM D 2006 source : AC7 22) chain D residue 1240 type sequence T description BINDING SITE FOR RESIDUE 2TM D 2006 source : AC7 23) chain D residue 1201 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 24) chain D residue 1204 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 25) chain D residue 739 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 26) chain D residue 741 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 27) chain D residue 743 type BINDING sequence D description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 28) chain D residue 1112 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 29) chain D residue 1194 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 30) chain D residue 76 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 31) chain D residue 58 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 32) chain D residue 60 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1 33) chain D residue 73 type BINDING sequence C description BINDING => ECO:0000255|HAMAP-Rule:MF_01322 source Swiss-Prot : SWS_FT_FI1

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