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eF-site ID
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4q4z-C |
PDB Code
|
4q4z |
Chain
|
C |
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click to enlarge
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Title
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Thermus thermophilus RNA polymerase de novo transcription initiation complex |
Classification
|
transcription/DNA |
Compound
|
DNA-directed RNA polymerase subunit alpha |
Source
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ORGANISM_SCIENTIFIC: Thermus thermophilus; |
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Sequence
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C: |
MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRE
NVGIQAAFRETFPIEEGLVLDFLEYRLGEPPFPQDECREK
DLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGS
FIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLP
KRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQET
LARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGD
PPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLS
GRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDID
HLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDS
LTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRH
KRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEG
ANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYM
TATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSP
EEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQT
QAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKV
DGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVG
QRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFED
AIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDI
PHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESE
PTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRL
RRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNK
GVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQIL
ETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYF
GKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKEL
FLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMH
ARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAA
HTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFR
VLVKELQALALDVQTLDEKDNPVDIFEGLASK
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Description
|
|
Functional site
|
|
1)
|
chain |
C |
residue |
567 |
type |
|
sequence |
Q
|
description |
BINDING SITE FOR RESIDUE ATP C 1201
|
source |
: AC1
|
|
2)
|
chain |
C |
residue |
838 |
type |
|
sequence |
K
|
description |
BINDING SITE FOR RESIDUE ATP C 1201
|
source |
: AC1
|
|
3)
|
chain |
C |
residue |
999 |
type |
|
sequence |
H
|
description |
BINDING SITE FOR RESIDUE ATP C 1201
|
source |
: AC1
|
|
4)
|
chain |
C |
residue |
557 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE 2TM D 2006
|
source |
: AC7
|
|
5)
|
chain |
C |
residue |
879 |
type |
|
sequence |
R
|
description |
BINDING SITE FOR RESIDUE 2TM D 2006
|
source |
: AC7
|
|
6)
|
chain |
C |
residue |
836-848 |
type |
prosite |
sequence |
GDKLANRHGNKGV
|
description |
RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
|
source |
prosite : PS01166
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