eF-site ID 4ol8-ABCDEFGH
PDB Code 4ol8
Chain A, B, C, D, E, F, G, H

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Title Ty3 reverse transcriptase bound to DNA/RNA
Classification TRANSFERASE, HYDROLASE/RNA/DNA
Compound Reverse transcriptase/ribonuclease H
Source Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (4OL8)
Sequence A:  PVWLQQKYREIIRNDLPPPVKHDIEIKPGARLPRLQPYHV
TEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKTFR
LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDL
HSGYHQIPXEPKDRYKTAFVTPSGKYEYTVXPFGLVNAPS
TFARYXADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTV
LERLKNENLIVKKKKCKFEETEFLGYSIGIQKIAPLQHKC
AAIRDFPTPKTVKQAQRFLGXINYYRRFIPNCSKIAQPIT
EKQDKAIDKLKDAPFNNKANYRLTTDASKDGIGAVLEEVD
NKNKLVGVVGYFSKSLEYPAGELELLGIIKALHHFRYXLH
GKHFTLRTNHARRVQRWLDDLATYDFTLEY
B:  KDTFCTLPVWLQQKYREIIRNDLPPRPAPVKHDIEIKPGA
RLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSS
PVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLS
RIGNAQIFTTLDLHSGYHQIPXEPKDRYKTAFVTPSGKYE
YTVXPFGLVNAPSTFARYXADTFRDLRFVNVYLDDILIFS
ESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLG
YSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGXINYY
RRFIPNCSKIAQPIQLFICDKSQWTEKQDKAIDKLKDALC
NSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVG
VVGYFSKSLEYPAGELELLGIIKALHHFRYXLHGKHFTLR
TNHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPK
NVVADAISRAVY
C:  UGAGAGAGAGGAAGAUG
D:  ATCTTCCTCTCTCTC
E:  PVWLQQKYREIIRNDLPPRPVKHDIEIKPGARLPRLQPYH
VTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPGTF
RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLD
LHSGYHQIPXEPKDRYKTAFVTPSGKYEYTVXPFGLVNAP
STFARYXADTFRDLRFVNVYLDDILIFSESPEEHWKHLDT
VLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPHK
CAAIRDFPTPKTVKQAQRFLGXINYYRRFIPNCSKIAQPI
TEKQDKAIDKLKSPVLVPFNYRLTTDASKDGIGAVLEVGY
FSKSLESAQGELELLGIIKALHHFRYXLHGKHFTLRTNHI
EPARRVQRWLDDLATYDFTLE
F:  KDTFCTLPVWLQQKYREIIRNDLPPRPAPVKHDIEIKPGA
RLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSS
PVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLS
RIGNAQIFTTLDLHSGYHQIPXEPKDRYKTAFVTPSGKYE
YTVXPFGLVNAPSTFARYXADTFRDLRFVNVYLDDILIFS
ESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLG
YSIGIQKIAPLQHKCAAIRDFPTKQAQRFLGXINYYRRFI
PNCSKIAQPTEKQDKAIDKLKDALCNSPVLVPFNNKANYR
LTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSYPAGELE
LLGIIKALHHFRYXLHGKHFTLRTNHISLLSLQNKNEPAR
RVQRWLDDLATYDFTLEYLVVADAISR
G:  UGAGAGAGAGGAAGAUG
H:  CATCTTCCTCTCTCTC
Description (1)  Reverse transcriptase/ribonuclease H (E.C.2.7.7.49, 2.7.7.7, 3.1.26.4)


Functional site

1) chain B
residue 287
type
sequence K
description BINDING SITE FOR RESIDUE SO4 B 501
source : AC1

2) chain B
residue 291
type
sequence R
description BINDING SITE FOR RESIDUE SO4 B 501
source : AC1

3) chain B
residue 473
type
sequence R
description BINDING SITE FOR RESIDUE SO4 B 501
source : AC1

4) chain B
residue 287
type
sequence K
description BINDING SITE FOR RESIDUE SO4 B 502
source : AC2

5) chain B
residue 473
type
sequence R
description BINDING SITE FOR RESIDUE SO4 B 502
source : AC2

6) chain A
residue 151
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

7) chain B
residue 358
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

8) chain B
residue 401
type BINDING
sequence E
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

9) chain B
residue 426
type BINDING
sequence N
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

10) chain F
residue 151
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

11) chain F
residue 213
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

12) chain F
residue 214
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

13) chain F
residue 358
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

14) chain F
residue 401
type BINDING
sequence E
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

15) chain F
residue 426
type BINDING
sequence N
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

16) chain E
residue 151
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

17) chain A
residue 213
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

18) chain E
residue 213
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

19) chain E
residue 214
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

20) chain E
residue 358
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

21) chain E
residue 401
type BINDING
sequence E
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

22) chain E
residue 426
type BINDING
sequence N
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

23) chain A
residue 214
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

24) chain A
residue 358
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

25) chain A
residue 401
type BINDING
sequence E
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

26) chain A
residue 426
type BINDING
sequence N
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

27) chain B
residue 151
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

28) chain B
residue 213
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

29) chain B
residue 214
type BINDING
sequence D
description BINDING => ECO:0000250
source Swiss-Prot : SWS_FT_FI1

30) chain B
residue 476
type SITE
sequence Y
description Cleavage; by Ty3 protease
source Swiss-Prot : SWS_FT_FI2


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