eF-site ID 4oir-C
PDB Code 4oir
Chain C

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Title Crystal structure of Thermus thermophilus RNA polymerase transcription initiation complex soaked with GE23077 and rifamycin SV
Classification TRANSCRIPTION, TRANSFERASE/ANTIBIOTIC
Compound DNA-directed RNA polymerase subunit alpha
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence C:  MEIKRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRE
NVGIQAAFRETFPIEEGLVLDFLEYRLGEPPFPQDECREK
DLTYQAPLYARLQLIHKDTGLIKEDEVFLGHIPLMTEDGS
FIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLP
KRGPWIDLEVEPNGVVSMKVNKRKFPLVLLLRVLGYDQET
LARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGD
PPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLS
GRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDID
HLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDS
LTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLSSLRH
KRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEG
ANIGLITSLAAYARVDELGFIRTPYRRVVGGVVTDEVVYM
TATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSP
EEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNMQT
QAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKV
DGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVG
QRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFED
AIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDI
PHLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESE
PTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRL
RRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNK
GVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQIL
ETHLGLAGYFLGQRYISPIFDGAKEPEIKELLAQAFEVYF
GKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKEL
FLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMH
ARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAA
HTLQEMLTLKSDDIEGRNAAYEAIIKGEDVPEPSVPESFR
VLVKELQALALDVQTLDEKDNPVDIFEGLASK
Description


Functional site

1) chain C
residue 390
type
sequence Q
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

2) chain C
residue 392
type
sequence S
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

3) chain C
residue 393
type
sequence Q
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

4) chain C
residue 394
type
sequence F
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

5) chain C
residue 405
type
sequence R
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

6) chain C
residue 406
type
sequence H
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

7) chain C
residue 409
type
sequence R
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

8) chain C
residue 411
type
sequence S
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

9) chain C
residue 420
type
sequence R
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

10) chain C
residue 448
type
sequence N
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

11) chain C
residue 452
type
sequence I
description BINDING SITE FOR RESIDUE RFV C 1201
source : AC2

12) chain C
residue 445
type
sequence E
description BINDING SITE FOR GE23077
source : AC8

13) chain C
residue 446
type
sequence G
description BINDING SITE FOR GE23077
source : AC8

14) chain C
residue 557
type
sequence R
description BINDING SITE FOR GE23077
source : AC8

15) chain C
residue 560
type
sequence M
description BINDING SITE FOR GE23077
source : AC8

16) chain C
residue 563
type
sequence N
description BINDING SITE FOR GE23077
source : AC8

17) chain C
residue 567
type
sequence Q
description BINDING SITE FOR GE23077
source : AC8

18) chain C
residue 838
type
sequence K
description BINDING SITE FOR GE23077
source : AC8

19) chain C
residue 846
type
sequence K
description BINDING SITE FOR GE23077
source : AC8

20) chain C
residue 836-848
type prosite
sequence GDKLANRHGNKGV
description RNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
source prosite : PS01166


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