eF-site ID 4oiq-F
PDB Code 4oiq
Chain F

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Title Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077 and rifampicin
Classification TRANSCRIPTION, TRANSFERASE/ANTIBIOTIC
Compound DNA-directed RNA polymerase subunit alpha
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence F:  SDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLS
EITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVE
EIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVS
IAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST
YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQ
LQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSL
ETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKA
LSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERI
RQIENKALRKLKYHESRTRKLRDFLD
Description


Functional site

1) chain F
residue 292
type
sequence A
description BINDING SITE FOR RESIDUE MG F 2001
source : AC6

2) chain F
residue 293
type
sequence E
description BINDING SITE FOR RESIDUE MG F 2001
source : AC6

3) chain F
residue 296
type
sequence G
description BINDING SITE FOR RESIDUE MG F 2001
source : AC6

4) chain F
residue 299
type
sequence W
description BINDING SITE FOR RESIDUE MG F 2001
source : AC6

5) chain F
residue 382-408
type prosite
sequence TLEEVGAFFGVTRERIRQIENKALRKL
description SIGMA70_2 Sigma-70 factors family signature 2. TleEVGaffgVTrerIrQIEnkaLrkL
source prosite : PS00716

6) chain F
residue 187-194
type prosite
sequence LIEANLRL
description CPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LIEANLRL
source prosite : PS00867


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