eF-site ID 4oio-F
PDB Code 4oio
Chain F

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Title Crystal structure of Thermus thermophilus pre-insertion substrate complex for de novo transcription initiation
Classification TRANSCRIPTION, TRANSFERASE
Compound DNA-directed RNA polymerase subunit alpha
Source ORGANISM_SCIENTIFIC: Thermus thermophilus;
Sequence F:  SDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLS
EITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVE
EIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVS
IAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST
YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQ
LQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSL
ETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKA
LSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERI
RQIENKALRKLKYHESRTRKLRDF
Description


Functional site

1) chain F
residue 382-408
type prosite
sequence TLEEVGAFFGVTRERIRQIENKALRKL
description SIGMA70_2 Sigma-70 factors family signature 2. TleEVGaffgVTrerIrQIEnkaLrkL
source prosite : PS00716

2) chain F
residue 187-194
type prosite
sequence LIEANLRL
description CPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LIEANLRL
source prosite : PS00867


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